Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4031 and GFF4032 are separated by 160 nucleotides GFF4032 and GFF4033 are separated by 8 nucleotides
GFF4031 - Phytoene synthase (EC 2.5.1.32), at 945,641 to 946,492
GFF4031
GFF4032 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 946,653 to 947,753
GFF4032
GFF4033 - Probable transmembrane drug efflux protein, at 947,762 to 950,923
GFF4033
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1 at 945.954 kb on + strand, within GFF4031 at 945.955 kb on - strand, within GFF4031 at 946.065 kb on + strand, within GFF4031 at 946.065 kb on + strand, within GFF4031 at 946.114 kb on - strand, within GFF4031 at 946.140 kb on + strand, within GFF4031 at 946.141 kb on - strand, within GFF4031 at 946.324 kb on - strand, within GFF4031 at 946.405 kb on - strand, within GFF4031 at 946.470 kb on + strand at 946.470 kb on + strand at 946.470 kb on + strand at 946.556 kb on - strand at 946.556 kb on - strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 947.014 kb on - strand, within GFF4032 at 947.014 kb on - strand, within GFF4032 at 947.146 kb on - strand, within GFF4032 at 947.146 kb on - strand, within GFF4032 at 947.424 kb on + strand, within GFF4032 at 947.482 kb on - strand, within GFF4032 at 947.733 kb on + strand at 948.044 kb on + strand at 948.045 kb on - strand at 948.065 kb on + strand at 948.066 kb on - strand at 948.143 kb on + strand, within GFF4033 at 948.233 kb on + strand, within GFF4033 at 948.374 kb on + strand, within GFF4033 at 948.375 kb on - strand, within GFF4033 at 948.375 kb on - strand, within GFF4033 at 948.375 kb on - strand, within GFF4033 at 948.614 kb on + strand, within GFF4033 at 948.614 kb on + strand, within GFF4033 at 948.615 kb on - strand, within GFF4033
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 945,954 + GFF4031 0.37 -0.6 945,955 - GFF4031 0.37 +0.4 946,065 + GFF4031 0.50 -0.0 946,065 + GFF4031 0.50 +0.6 946,114 - GFF4031 0.56 +0.2 946,140 + GFF4031 0.59 +0.3 946,141 - GFF4031 0.59 +0.4 946,324 - GFF4031 0.80 +0.1 946,405 - GFF4031 0.90 -1.0 946,470 + +1.1 946,470 + +1.1 946,470 + -1.4 946,556 - -0.2 946,556 - -0.0 946,658 + +0.2 946,658 + -0.6 946,658 + -0.4 946,658 + +1.1 946,658 + -0.7 946,658 + -0.0 946,658 + -0.4 946,658 + -1.9 946,658 + -0.5 946,658 + +0.7 946,659 - +0.1 946,659 - -0.3 946,659 - +0.2 946,659 - -0.3 946,659 - +0.3 946,659 - +0.5 946,659 - -0.2 947,014 - GFF4032 0.33 -0.3 947,014 - GFF4032 0.33 -0.5 947,146 - GFF4032 0.45 -0.3 947,146 - GFF4032 0.45 -0.6 947,424 + GFF4032 0.70 -0.2 947,482 - GFF4032 0.75 -0.6 947,733 + -0.6 948,044 + +0.3 948,045 - -0.4 948,065 + +0.4 948,066 - +1.0 948,143 + GFF4033 0.12 +0.2 948,233 + GFF4033 0.15 +0.0 948,374 + GFF4033 0.19 +0.3 948,375 - GFF4033 0.19 +0.6 948,375 - GFF4033 0.19 +0.1 948,375 - GFF4033 0.19 -0.6 948,614 + GFF4033 0.27 -0.1 948,614 + GFF4033 0.27 +0.4 948,615 - GFF4033 0.27 -0.0
Or see this region's nucleotide sequence