Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3954 and GFF3955 overlap by 4 nucleotides GFF3955 and GFF3956 are separated by 3 nucleotides GFF3956 and GFF3957 are separated by 4 nucleotides
GFF3954 - hypothetical protein, at 869,231 to 869,434
GFF3954
GFF3955 - Sugar phosphate isomerases/epimerase, at 869,431 to 870,309
GFF3955
GFF3956 - Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism, at 870,313 to 871,500
GFF3956
GFF3957 - GLUCOSE-FRUCTOSE OXIDOREDUCTASE (EC 1.1.99.28), at 871,505 to 872,668
GFF3957
Position (kb) 870
871
872 Strain fitness (log2 ratio) -2
-1
0
1 at 869.720 kb on + strand, within GFF3955 at 869.720 kb on + strand, within GFF3955 at 869.721 kb on - strand, within GFF3955 at 869.825 kb on + strand, within GFF3955 at 869.825 kb on + strand, within GFF3955 at 869.826 kb on - strand, within GFF3955 at 870.515 kb on + strand, within GFF3956 at 870.743 kb on + strand, within GFF3956 at 870.744 kb on - strand, within GFF3956 at 870.896 kb on + strand, within GFF3956 at 870.977 kb on + strand, within GFF3956 at 870.978 kb on - strand, within GFF3956 at 870.989 kb on + strand, within GFF3956 at 871.388 kb on + strand at 871.451 kb on + strand at 871.451 kb on + strand at 871.451 kb on + strand at 871.451 kb on + strand at 871.451 kb on + strand at 871.452 kb on - strand at 871.452 kb on - strand at 871.611 kb on + strand at 871.612 kb on - strand at 871.612 kb on - strand at 871.674 kb on + strand, within GFF3957 at 871.674 kb on + strand, within GFF3957 at 871.675 kb on - strand, within GFF3957 at 871.929 kb on + strand, within GFF3957 at 871.956 kb on + strand, within GFF3957 at 871.957 kb on - strand, within GFF3957 at 871.957 kb on - strand, within GFF3957 at 872.341 kb on - strand, within GFF3957
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 869,720 + GFF3955 0.33 +0.1 869,720 + GFF3955 0.33 +0.2 869,721 - GFF3955 0.33 +0.4 869,825 + GFF3955 0.45 +0.5 869,825 + GFF3955 0.45 +0.1 869,826 - GFF3955 0.45 -0.5 870,515 + GFF3956 0.17 -0.7 870,743 + GFF3956 0.36 -0.0 870,744 - GFF3956 0.36 -0.3 870,896 + GFF3956 0.49 -0.0 870,977 + GFF3956 0.56 -0.1 870,978 - GFF3956 0.56 -2.7 870,989 + GFF3956 0.57 -0.4 871,388 + +0.1 871,451 + -1.2 871,451 + -2.4 871,451 + -1.0 871,451 + -0.2 871,451 + -0.3 871,452 - +0.2 871,452 - +0.1 871,611 + +0.3 871,612 - +0.0 871,612 - +0.1 871,674 + GFF3957 0.15 +0.8 871,674 + GFF3957 0.15 +0.3 871,675 - GFF3957 0.15 +0.0 871,929 + GFF3957 0.36 -0.0 871,956 + GFF3957 0.39 -0.2 871,957 - GFF3957 0.39 -0.3 871,957 - GFF3957 0.39 -0.4 872,341 - GFF3957 0.72 -0.4
Or see this region's nucleotide sequence