Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3934 and GFF3935 are separated by 18 nucleotides GFF3935 and GFF3936 overlap by 1 nucleotides
GFF3934 - Aspartate aminotransferase (EC 2.6.1.1), at 846,849 to 848,072
GFF3934
GFF3935 - Homoserine dehydrogenase (EC 1.1.1.3), at 848,091 to 849,422
GFF3935
GFF3936 - Threonine synthase (EC 4.2.3.1), at 849,422 to 850,864
GFF3936
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1 at 847.143 kb on + strand, within GFF3934 at 847.143 kb on + strand, within GFF3934 at 847.143 kb on + strand, within GFF3934 at 847.144 kb on - strand, within GFF3934 at 847.144 kb on - strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.285 kb on - strand, within GFF3934 at 847.402 kb on - strand, within GFF3934 at 847.477 kb on - strand, within GFF3934 at 847.477 kb on - strand, within GFF3934 at 847.491 kb on + strand, within GFF3934 at 847.491 kb on + strand, within GFF3934 at 847.492 kb on - strand, within GFF3934 at 847.492 kb on - strand, within GFF3934 at 847.572 kb on + strand, within GFF3934 at 847.573 kb on - strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.639 kb on - strand, within GFF3934 at 847.846 kb on - strand, within GFF3934 at 847.846 kb on - strand, within GFF3934 at 847.846 kb on - strand, within GFF3934 at 847.875 kb on + strand, within GFF3934 at 847.875 kb on + strand, within GFF3934 at 847.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 847,143 + GFF3934 0.24 -1.0 847,143 + GFF3934 0.24 +0.8 847,143 + GFF3934 0.24 +0.6 847,144 - GFF3934 0.24 -1.6 847,144 - GFF3934 0.24 -1.7 847,284 + GFF3934 0.36 +0.2 847,284 + GFF3934 0.36 -1.7 847,284 + GFF3934 0.36 -2.5 847,284 + GFF3934 0.36 -2.1 847,284 + GFF3934 0.36 -1.2 847,284 + GFF3934 0.36 +0.6 847,284 + GFF3934 0.36 -0.7 847,284 + GFF3934 0.36 -0.5 847,285 - GFF3934 0.36 -1.0 847,402 - GFF3934 0.45 -1.2 847,477 - GFF3934 0.51 -2.7 847,477 - GFF3934 0.51 -0.8 847,491 + GFF3934 0.52 -2.3 847,491 + GFF3934 0.52 -0.4 847,492 - GFF3934 0.53 -2.1 847,492 - GFF3934 0.53 -0.4 847,572 + GFF3934 0.59 +0.3 847,573 - GFF3934 0.59 -1.4 847,638 + GFF3934 0.64 -1.0 847,638 + GFF3934 0.64 -1.6 847,638 + GFF3934 0.64 -2.2 847,638 + GFF3934 0.64 -1.0 847,639 - GFF3934 0.65 -0.2 847,846 - GFF3934 0.81 -1.5 847,846 - GFF3934 0.81 -2.6 847,846 - GFF3934 0.81 -1.1 847,875 + GFF3934 0.84 +0.6 847,875 + GFF3934 0.84 -1.1 847,959 + -0.8
Or see this region's nucleotide sequence