Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3910 and GFF3911 are separated by 18 nucleotides GFF3911 and GFF3912 are separated by 27 nucleotides GFF3912 and GFF3913 are separated by 15 nucleotides GFF3913 and GFF3914 are separated by 267 nucleotides
GFF3910 - Ferrichrome-iron receptor, at 822,091 to 824,298
GFF3910
GFF3911 - hypothetical protein, at 824,317 to 824,523
GFF3911
GFF3912 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 824,551 to 826,971
GFF3912
GFF3913 - hypothetical protein, at 826,987 to 827,136
GFF3913
GFF3914 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 827,404 to 827,967
GFF3914
Position (kb) 824
825
826
827 Strain fitness (log2 ratio) -2
-1
0
1 at 823.565 kb on + strand, within GFF3910 at 823.565 kb on + strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.622 kb on + strand, within GFF3910 at 824.106 kb on + strand at 824.156 kb on + strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.416 kb on - strand, within GFF3911 at 824.606 kb on + strand at 824.607 kb on - strand at 824.607 kb on - strand at 824.616 kb on - strand at 824.646 kb on - strand at 824.684 kb on + strand at 824.753 kb on + strand at 824.754 kb on - strand at 824.754 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.972 kb on + strand, within GFF3912 at 824.972 kb on + strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 825.224 kb on + strand, within GFF3912 at 825.225 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.324 kb on - strand, within GFF3912 at 825.333 kb on - strand, within GFF3912 at 825.398 kb on + strand, within GFF3912 at 825.398 kb on + strand, within GFF3912 at 825.407 kb on + strand, within GFF3912 at 825.407 kb on + strand, within GFF3912 at 825.408 kb on - strand, within GFF3912 at 825.452 kb on + strand, within GFF3912 at 825.659 kb on + strand, within GFF3912 at 825.659 kb on + strand, within GFF3912 at 825.659 kb on + strand, within GFF3912 at 825.659 kb on + strand, within GFF3912 at 825.659 kb on + strand, within GFF3912 at 825.660 kb on - strand, within GFF3912 at 825.660 kb on - strand, within GFF3912 at 825.746 kb on + strand, within GFF3912 at 825.746 kb on + strand, within GFF3912 at 825.746 kb on + strand, within GFF3912 at 825.747 kb on - strand, within GFF3912 at 825.954 kb on - strand, within GFF3912 at 826.040 kb on + strand, within GFF3912 at 826.040 kb on + strand, within GFF3912 at 826.082 kb on + strand, within GFF3912 at 826.083 kb on - strand, within GFF3912 at 826.083 kb on - strand, within GFF3912 at 826.083 kb on - strand, within GFF3912 at 826.083 kb on - strand, within GFF3912 at 826.113 kb on - strand, within GFF3912 at 826.113 kb on - strand, within GFF3912 at 826.113 kb on - strand, within GFF3912 at 826.250 kb on + strand, within GFF3912 at 826.251 kb on - strand, within GFF3912 at 826.251 kb on - strand, within GFF3912 at 826.251 kb on - strand, within GFF3912 at 826.277 kb on + strand, within GFF3912 at 826.277 kb on + strand, within GFF3912 at 826.278 kb on - strand, within GFF3912 at 826.278 kb on - strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.334 kb on + strand, within GFF3912 at 826.335 kb on - strand, within GFF3912 at 826.335 kb on - strand, within GFF3912 at 826.335 kb on - strand, within GFF3912 at 826.335 kb on - strand, within GFF3912 at 826.335 kb on - strand, within GFF3912 at 826.335 kb on - strand, within GFF3912 at 826.361 kb on + strand, within GFF3912 at 826.566 kb on - strand, within GFF3912 at 826.566 kb on - strand, within GFF3912 at 826.616 kb on + strand, within GFF3912 at 826.616 kb on + strand, within GFF3912 at 826.616 kb on + strand, within GFF3912 at 826.617 kb on - strand, within GFF3912 at 826.617 kb on - strand, within GFF3912 at 826.640 kb on + strand, within GFF3912 at 826.724 kb on + strand, within GFF3912 at 826.724 kb on + strand, within GFF3912 at 826.724 kb on + strand, within GFF3912 at 826.725 kb on - strand, within GFF3912 at 826.811 kb on - strand at 826.877 kb on + strand at 826.877 kb on + strand at 826.877 kb on + strand at 826.878 kb on - strand at 826.878 kb on - strand at 826.878 kb on - strand at 826.878 kb on - strand at 826.919 kb on + strand at 826.919 kb on + strand at 826.920 kb on - strand at 826.979 kb on - strand at 826.983 kb on - strand at 826.983 kb on - strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.986 kb on + strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 826.987 kb on - strand at 827.075 kb on + strand, within GFF3913 at 827.138 kb on - strand at 827.207 kb on - strand at 827.317 kb on + strand at 827.329 kb on - strand at 827.329 kb on - strand at 827.418 kb on + strand at 827.418 kb on + strand at 827.419 kb on - strand at 827.419 kb on - strand at 827.419 kb on - strand at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.575 kb on + strand, within GFF3914 at 827.576 kb on - strand, within GFF3914 at 827.576 kb on - strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.608 kb on + strand, within GFF3914 at 827.609 kb on - strand, within GFF3914 at 827.609 kb on - strand, within GFF3914 at 827.609 kb on - strand, within GFF3914 at 827.872 kb on + strand, within GFF3914 at 827.873 kb on - strand, within GFF3914 at 827.873 kb on - strand, within GFF3914
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 823,565 + GFF3910 0.67 -1.4 823,565 + GFF3910 0.67 -0.2 823,566 - GFF3910 0.67 -0.0 823,566 - GFF3910 0.67 -0.2 823,566 - GFF3910 0.67 -0.2 823,566 - GFF3910 0.67 -0.9 823,622 + GFF3910 0.69 +0.4 824,106 + +0.3 824,156 + -0.2 824,157 - +0.3 824,157 - -0.2 824,157 - +1.1 824,157 - +0.7 824,416 - GFF3911 0.48 -0.2 824,606 + +0.3 824,607 - -0.8 824,607 - -0.3 824,616 - -0.1 824,646 - +0.4 824,684 + +0.5 824,753 + +0.3 824,754 - +0.3 824,754 - +0.6 824,781 - -0.0 824,781 - +0.8 824,781 - +0.5 824,781 - +0.1 824,789 + -0.3 824,789 + +0.3 824,972 + GFF3912 0.17 +0.5 824,972 + GFF3912 0.17 +0.1 824,973 - GFF3912 0.17 +1.0 824,973 - GFF3912 0.17 -2.0 824,973 - GFF3912 0.17 +0.9 824,973 - GFF3912 0.17 +0.8 824,978 + GFF3912 0.18 -0.1 824,978 + GFF3912 0.18 +0.1 824,978 + GFF3912 0.18 +0.3 824,979 - GFF3912 0.18 +0.2 824,979 - GFF3912 0.18 -0.6 824,979 - GFF3912 0.18 +0.8 825,224 + GFF3912 0.28 -0.2 825,225 - GFF3912 0.28 +1.2 825,279 - GFF3912 0.30 -0.2 825,279 - GFF3912 0.30 -0.4 825,279 - GFF3912 0.30 +0.2 825,324 - GFF3912 0.32 -0.0 825,333 - GFF3912 0.32 -0.8 825,398 + GFF3912 0.35 -0.1 825,398 + GFF3912 0.35 -0.8 825,407 + GFF3912 0.35 +0.8 825,407 + GFF3912 0.35 +1.0 825,408 - GFF3912 0.35 +1.3 825,452 + GFF3912 0.37 -0.0 825,659 + GFF3912 0.46 +0.6 825,659 + GFF3912 0.46 -0.3 825,659 + GFF3912 0.46 -0.2 825,659 + GFF3912 0.46 +1.2 825,659 + GFF3912 0.46 +0.3 825,660 - GFF3912 0.46 +0.1 825,660 - GFF3912 0.46 -0.0 825,746 + GFF3912 0.49 +0.7 825,746 + GFF3912 0.49 -0.8 825,746 + GFF3912 0.49 +0.1 825,747 - GFF3912 0.49 +0.2 825,954 - GFF3912 0.58 +0.1 826,040 + GFF3912 0.62 -0.2 826,040 + GFF3912 0.62 +0.1 826,082 + GFF3912 0.63 +0.1 826,083 - GFF3912 0.63 -0.1 826,083 - GFF3912 0.63 -0.2 826,083 - GFF3912 0.63 +0.3 826,083 - GFF3912 0.63 +0.5 826,113 - GFF3912 0.65 -0.5 826,113 - GFF3912 0.65 +0.1 826,113 - GFF3912 0.65 +1.4 826,250 + GFF3912 0.70 +0.4 826,251 - GFF3912 0.70 +0.5 826,251 - GFF3912 0.70 -0.9 826,251 - GFF3912 0.70 +0.3 826,277 + GFF3912 0.71 -2.1 826,277 + GFF3912 0.71 +0.6 826,278 - GFF3912 0.71 +0.3 826,278 - GFF3912 0.71 -0.0 826,334 + GFF3912 0.74 +0.1 826,334 + GFF3912 0.74 +0.5 826,334 + GFF3912 0.74 -0.6 826,334 + GFF3912 0.74 +0.6 826,334 + GFF3912 0.74 +0.1 826,334 + GFF3912 0.74 -0.7 826,334 + GFF3912 0.74 -0.2 826,334 + GFF3912 0.74 +0.6 826,335 - GFF3912 0.74 +0.2 826,335 - GFF3912 0.74 -1.4 826,335 - GFF3912 0.74 +0.7 826,335 - GFF3912 0.74 -0.3 826,335 - GFF3912 0.74 -0.3 826,335 - GFF3912 0.74 -0.4 826,361 + GFF3912 0.75 -0.7 826,566 - GFF3912 0.83 -0.6 826,566 - GFF3912 0.83 -0.3 826,616 + GFF3912 0.85 -0.4 826,616 + GFF3912 0.85 +0.2 826,616 + GFF3912 0.85 +0.3 826,617 - GFF3912 0.85 +0.5 826,617 - GFF3912 0.85 +0.2 826,640 + GFF3912 0.86 +0.2 826,724 + GFF3912 0.90 +0.6 826,724 + GFF3912 0.90 +0.7 826,724 + GFF3912 0.90 -0.4 826,725 - GFF3912 0.90 +0.3 826,811 - +0.1 826,877 + +0.2 826,877 + -0.9 826,877 + -0.1 826,878 - +0.5 826,878 - -0.2 826,878 - -0.6 826,878 - -0.1 826,919 + -0.5 826,919 + +0.3 826,920 - -2.5 826,979 - -0.5 826,983 - +0.5 826,983 - +1.4 826,986 + +0.1 826,986 + -0.6 826,986 + -0.1 826,986 + -0.4 826,986 + -0.0 826,986 + -0.1 826,986 + +0.2 826,986 + -0.5 826,986 + +0.1 826,987 - -0.0 826,987 - -0.2 826,987 - +0.4 826,987 - +0.1 826,987 - +0.3 826,987 - -0.2 826,987 - -0.0 826,987 - +0.2 826,987 - -0.1 826,987 - -0.0 826,987 - -1.0 827,075 + GFF3913 0.59 -0.2 827,138 - +0.2 827,207 - -1.7 827,317 + -0.2 827,329 - +0.3 827,329 - -0.2 827,418 + -0.2 827,418 + -0.1 827,419 - -0.5 827,419 - -0.3 827,419 - +0.5 827,575 + GFF3914 0.30 +0.1 827,575 + GFF3914 0.30 +1.6 827,575 + GFF3914 0.30 -0.1 827,575 + GFF3914 0.30 -0.7 827,575 + GFF3914 0.30 +1.1 827,576 - GFF3914 0.30 -0.0 827,576 - GFF3914 0.30 +0.6 827,608 + GFF3914 0.36 +0.2 827,608 + GFF3914 0.36 +1.0 827,608 + GFF3914 0.36 -0.0 827,608 + GFF3914 0.36 +0.3 827,608 + GFF3914 0.36 -0.2 827,608 + GFF3914 0.36 -2.3 827,609 - GFF3914 0.36 -0.2 827,609 - GFF3914 0.36 +0.1 827,609 - GFF3914 0.36 +0.7 827,872 + GFF3914 0.83 -0.5 827,873 - GFF3914 0.83 +1.4 827,873 - GFF3914 0.83 +0.9
Or see this region's nucleotide sequence