Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3905 and GFF3906 are separated by 17 nucleotides GFF3906 and GFF3907 are separated by 30 nucleotides GFF3907 and GFF3908 overlap by 4 nucleotides
GFF3905 - FIG019993: putative exported protein, at 817,387 to 817,899
GFF3905
GFF3906 - Nikel transport family protein NikM, at 817,917 to 818,849
GFF3906
GFF3907 - Thiamin biosynthesis lipoprotein ApbE, at 818,880 to 819,944
GFF3907
GFF3908 - probable oxidoreductase, at 819,941 to 821,320
GFF3908
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1 at 818.032 kb on - strand, within GFF3906 at 818.032 kb on - strand, within GFF3906 at 818.088 kb on + strand, within GFF3906 at 818.088 kb on + strand, within GFF3906 at 818.088 kb on + strand, within GFF3906 at 818.089 kb on - strand, within GFF3906 at 818.091 kb on + strand, within GFF3906 at 818.092 kb on - strand, within GFF3906 at 818.223 kb on + strand, within GFF3906 at 818.224 kb on - strand, within GFF3906 at 818.224 kb on - strand, within GFF3906 at 818.224 kb on - strand, within GFF3906 at 818.640 kb on + strand, within GFF3906 at 818.641 kb on - strand, within GFF3906 at 818.641 kb on - strand, within GFF3906 at 819.456 kb on + strand, within GFF3907 at 819.670 kb on - strand, within GFF3907 at 819.681 kb on + strand, within GFF3907 at 819.862 kb on + strand at 819.862 kb on + strand at 819.962 kb on + strand at 819.962 kb on + strand at 819.962 kb on + strand at 819.986 kb on + strand at 819.986 kb on + strand at 819.987 kb on - strand at 819.987 kb on - strand at 820.103 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.374 kb on - strand, within GFF3908 at 820.374 kb on - strand, within GFF3908 at 820.374 kb on - strand, within GFF3908 at 820.724 kb on + strand, within GFF3908 at 820.724 kb on + strand, within GFF3908
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 818,032 - GFF3906 0.12 -0.5 818,032 - GFF3906 0.12 -0.4 818,088 + GFF3906 0.18 +0.2 818,088 + GFF3906 0.18 +0.2 818,088 + GFF3906 0.18 -0.2 818,089 - GFF3906 0.18 -1.4 818,091 + GFF3906 0.19 +0.6 818,092 - GFF3906 0.19 +0.9 818,223 + GFF3906 0.33 +0.2 818,224 - GFF3906 0.33 +0.1 818,224 - GFF3906 0.33 +0.2 818,224 - GFF3906 0.33 +0.4 818,640 + GFF3906 0.77 -0.9 818,641 - GFF3906 0.78 -0.1 818,641 - GFF3906 0.78 +1.2 819,456 + GFF3907 0.54 -2.1 819,670 - GFF3907 0.74 -0.3 819,681 + GFF3907 0.75 -0.2 819,862 + -0.6 819,862 + -1.1 819,962 + +0.1 819,962 + -0.8 819,962 + -0.2 819,986 + -0.7 819,986 + -0.5 819,987 - +0.7 819,987 - -0.1 820,103 + GFF3908 0.12 +0.2 820,373 + GFF3908 0.31 +0.1 820,373 + GFF3908 0.31 -0.6 820,373 + GFF3908 0.31 -0.5 820,373 + GFF3908 0.31 -0.1 820,373 + GFF3908 0.31 +0.3 820,373 + GFF3908 0.31 +0.6 820,374 - GFF3908 0.31 -0.3 820,374 - GFF3908 0.31 -1.2 820,374 - GFF3908 0.31 +0.1 820,724 + GFF3908 0.57 -0.3 820,724 + GFF3908 0.57 -0.5
Or see this region's nucleotide sequence