Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3877 and GFF3878 are separated by 28 nucleotides GFF3878 and GFF3879 are separated by 127 nucleotides
GFF3877 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 790,727 to 792,559
GFF3877
GFF3878 - Quinone oxidoreductase (EC 1.6.5.5), at 792,588 to 793,574
GFF3878
GFF3879 - 5-nucleotidase SurE (EC 3.1.3.5), at 793,702 to 794,481
GFF3879
Position (kb) 792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.581 kb on + strand at 792.640 kb on + strand at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.862 kb on + strand, within GFF3878 at 792.924 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.004 kb on - strand, within GFF3878 at 793.204 kb on + strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.615 kb on + strand at 793.689 kb on + strand at 793.690 kb on - strand at 793.709 kb on + strand at 793.709 kb on + strand at 793.759 kb on + strand at 793.855 kb on + strand, within GFF3879 at 793.855 kb on + strand, within GFF3879 at 793.855 kb on + strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.885 kb on + strand, within GFF3879 at 794.005 kb on + strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.038 kb on + strand, within GFF3879 at 794.039 kb on - strand, within GFF3879 at 794.305 kb on + strand, within GFF3879 at 794.305 kb on + strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.378 kb on - strand, within GFF3879
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 792,581 + +0.8 792,640 + +0.1 792,706 + GFF3878 0.12 +0.8 792,706 + GFF3878 0.12 +0.3 792,706 + GFF3878 0.12 +0.5 792,706 + GFF3878 0.12 +0.8 792,707 - GFF3878 0.12 +0.3 792,707 - GFF3878 0.12 -0.3 792,707 - GFF3878 0.12 -0.9 792,707 - GFF3878 0.12 +0.1 792,707 - GFF3878 0.12 +1.7 792,707 - GFF3878 0.12 +0.3 792,707 - GFF3878 0.12 +0.2 792,862 + GFF3878 0.28 +0.2 792,924 + GFF3878 0.34 +0.2 792,925 + GFF3878 0.34 +0.1 792,925 + GFF3878 0.34 -0.1 792,925 + GFF3878 0.34 -0.6 793,003 + GFF3878 0.42 +0.2 793,003 + GFF3878 0.42 -0.7 793,003 + GFF3878 0.42 +0.1 793,003 + GFF3878 0.42 -0.6 793,004 - GFF3878 0.42 -0.0 793,204 + GFF3878 0.62 -0.1 793,205 - GFF3878 0.63 +0.1 793,205 - GFF3878 0.63 +1.1 793,205 - GFF3878 0.63 -1.6 793,205 - GFF3878 0.63 +0.8 793,205 - GFF3878 0.63 +0.2 793,423 + GFF3878 0.85 -1.0 793,423 + GFF3878 0.85 -0.2 793,423 + GFF3878 0.85 +0.3 793,615 + +0.5 793,689 + +2.1 793,690 - +1.0 793,709 + +1.3 793,709 + +0.1 793,759 + -0.2 793,855 + GFF3879 0.20 -0.3 793,855 + GFF3879 0.20 +1.0 793,855 + GFF3879 0.20 -0.3 793,856 - GFF3879 0.20 -0.7 793,856 - GFF3879 0.20 -1.1 793,856 - GFF3879 0.20 -0.2 793,885 + GFF3879 0.23 +0.7 794,005 + GFF3879 0.39 -1.2 794,006 - GFF3879 0.39 -1.0 794,006 - GFF3879 0.39 -0.4 794,006 - GFF3879 0.39 -0.6 794,038 + GFF3879 0.43 +0.1 794,039 - GFF3879 0.43 -0.3 794,305 + GFF3879 0.77 +0.1 794,305 + GFF3879 0.77 +0.6 794,306 - GFF3879 0.77 -1.2 794,306 - GFF3879 0.77 -2.6 794,306 - GFF3879 0.77 -2.4 794,306 - GFF3879 0.77 -0.5 794,306 - GFF3879 0.77 -0.6 794,306 - GFF3879 0.77 -0.4 794,306 - GFF3879 0.77 -1.0 794,378 - GFF3879 0.87 +0.1
Or see this region's nucleotide sequence