Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3856 and GFF3857 are separated by 37 nucleotides GFF3857 and GFF3858 are separated by 122 nucleotides
GFF3856 - Tricarboxylate transport protein TctC, at 767,638 to 768,621
GFF3856
GFF3857 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 768,659 to 770,647
GFF3857
GFF3858 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 770,770 to 771,726
GFF3858
Position (kb) 768
769
770
771 Strain fitness (log2 ratio) -2
-1
0
1 at 767.714 kb on + strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.891 kb on + strand, within GFF3856 at 767.892 kb on - strand, within GFF3856 at 767.892 kb on - strand, within GFF3856 at 768.107 kb on + strand, within GFF3856 at 768.107 kb on + strand, within GFF3856 at 768.107 kb on + strand, within GFF3856 at 768.108 kb on - strand, within GFF3856 at 768.108 kb on - strand, within GFF3856 at 768.108 kb on - strand, within GFF3856 at 768.152 kb on + strand, within GFF3856 at 768.152 kb on + strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.182 kb on + strand, within GFF3856 at 768.183 kb on - strand, within GFF3856 at 768.287 kb on + strand, within GFF3856 at 768.287 kb on + strand, within GFF3856 at 768.288 kb on - strand, within GFF3856 at 768.350 kb on + strand, within GFF3856 at 768.501 kb on - strand, within GFF3856 at 768.738 kb on + strand at 768.738 kb on + strand at 768.739 kb on - strand at 769.279 kb on - strand, within GFF3857 at 769.536 kb on + strand, within GFF3857 at 769.537 kb on - strand, within GFF3857 at 769.617 kb on + strand, within GFF3857 at 769.785 kb on + strand, within GFF3857 at 769.786 kb on - strand, within GFF3857 at 769.786 kb on - strand, within GFF3857 at 769.807 kb on - strand, within GFF3857 at 769.807 kb on - strand, within GFF3857 at 769.807 kb on - strand, within GFF3857 at 769.956 kb on + strand, within GFF3857 at 769.956 kb on + strand, within GFF3857 at 769.956 kb on + strand, within GFF3857 at 769.956 kb on + strand, within GFF3857 at 769.957 kb on - strand, within GFF3857 at 769.957 kb on - strand, within GFF3857 at 769.977 kb on + strand, within GFF3857 at 769.977 kb on + strand, within GFF3857 at 770.508 kb on + strand at 770.509 kb on - strand at 770.517 kb on + strand at 770.518 kb on - strand at 770.684 kb on + strand at 770.684 kb on + strand at 770.684 kb on + strand at 770.684 kb on + strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.733 kb on - strand at 770.903 kb on + strand, within GFF3858 at 770.904 kb on - strand, within GFF3858 at 770.904 kb on - strand, within GFF3858 at 770.904 kb on - strand, within GFF3858 at 770.909 kb on + strand, within GFF3858 at 770.909 kb on + strand, within GFF3858 at 770.910 kb on - strand, within GFF3858 at 770.910 kb on - strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.327 kb on - strand, within GFF3858 at 771.533 kb on + strand, within GFF3858 at 771.533 kb on + strand, within GFF3858
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 767,714 + -0.1 767,715 - +0.3 767,715 - +0.7 767,715 - +0.2 767,891 + GFF3856 0.26 -0.5 767,892 - GFF3856 0.26 -0.1 767,892 - GFF3856 0.26 -0.5 768,107 + GFF3856 0.48 -1.0 768,107 + GFF3856 0.48 -0.4 768,107 + GFF3856 0.48 +0.7 768,108 - GFF3856 0.48 -2.4 768,108 - GFF3856 0.48 -0.2 768,108 - GFF3856 0.48 +1.0 768,152 + GFF3856 0.52 -0.4 768,152 + GFF3856 0.52 -2.1 768,153 - GFF3856 0.52 +0.6 768,153 - GFF3856 0.52 +0.2 768,153 - GFF3856 0.52 +0.3 768,153 - GFF3856 0.52 -0.3 768,153 - GFF3856 0.52 -0.1 768,182 + GFF3856 0.55 +0.2 768,183 - GFF3856 0.55 +0.0 768,287 + GFF3856 0.66 -1.7 768,287 + GFF3856 0.66 -0.3 768,288 - GFF3856 0.66 +1.2 768,350 + GFF3856 0.72 +0.6 768,501 - GFF3856 0.88 +1.2 768,738 + -0.3 768,738 + -0.7 768,739 - +0.2 769,279 - GFF3857 0.31 +1.3 769,536 + GFF3857 0.44 +0.2 769,537 - GFF3857 0.44 -0.4 769,617 + GFF3857 0.48 +0.3 769,785 + GFF3857 0.57 +0.4 769,786 - GFF3857 0.57 -1.4 769,786 - GFF3857 0.57 +0.2 769,807 - GFF3857 0.58 +0.1 769,807 - GFF3857 0.58 +0.6 769,807 - GFF3857 0.58 -1.4 769,956 + GFF3857 0.65 -0.2 769,956 + GFF3857 0.65 -0.5 769,956 + GFF3857 0.65 -0.0 769,956 + GFF3857 0.65 +0.9 769,957 - GFF3857 0.65 +0.7 769,957 - GFF3857 0.65 +1.1 769,977 + GFF3857 0.66 -0.4 769,977 + GFF3857 0.66 +0.2 770,508 + +0.8 770,509 - +1.0 770,517 + -0.2 770,518 - -0.6 770,684 + +0.1 770,684 + +0.3 770,684 + -0.5 770,684 + -1.1 770,685 - -0.2 770,685 - -0.4 770,685 - +0.4 770,685 - +0.7 770,733 - +0.4 770,903 + GFF3858 0.14 -0.3 770,904 - GFF3858 0.14 -0.4 770,904 - GFF3858 0.14 +0.6 770,904 - GFF3858 0.14 +0.5 770,909 + GFF3858 0.15 +0.5 770,909 + GFF3858 0.15 -0.0 770,910 - GFF3858 0.15 -0.0 770,910 - GFF3858 0.15 -0.1 771,326 + GFF3858 0.58 -0.3 771,326 + GFF3858 0.58 +0.8 771,326 + GFF3858 0.58 +0.1 771,326 + GFF3858 0.58 -0.7 771,327 - GFF3858 0.58 -0.1 771,533 + GFF3858 0.80 +0.5 771,533 + GFF3858 0.80 +0.3
Or see this region's nucleotide sequence