Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3783

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
680,152	+		GFF3782	0.40	-0.1
680,362	+		GFF3782	0.57	+0.3
680,437	+		GFF3782	0.63	-0.2
680,437	+		GFF3782	0.63	+0.3
680,438	-		GFF3782	0.63	-0.1
680,819	-				+0.2
681,598	+		GFF3783	0.37	+0.3
681,599	-		GFF3783	0.37	+0.3
681,725	-		GFF3783	0.44	+0.4
681,824	-		GFF3783	0.49	+0.1
681,824	-		GFF3783	0.49	+0.3
681,901	+		GFF3783	0.53	+0.0
681,901	+		GFF3783	0.53	+0.0
682,273	+		GFF3783	0.73	-0.7
682,385	-		GFF3783	0.79	+0.5
682,681	+				+0.9
682,682	-				+0.5
683,070	+		GFF3784	0.20	-0.0
683,070	+		GFF3784	0.20	-1.1
683,071	-		GFF3784	0.20	+0.2
683,190	+		GFF3784	0.35	-0.4
683,191	-		GFF3784	0.36	-1.0
683,191	-		GFF3784	0.36	+0.5
683,734	+				-0.0
683,742	+				+0.5