Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3669 and GFF3670 overlap by 4 nucleotides GFF3670 and GFF3671 are separated by 27 nucleotides GFF3671 and GFF3672 are separated by 299 nucleotides
GFF3669 - Nitrate ABC transporter, ATP-binding protein, at 557,730 to 558,536
GFF3669
GFF3670 - Cyanate ABC transporter, permease protein, at 558,533 to 559,450
GFF3670
GFF3671 - Nitrate ABC transporter, nitrate-binding protein, at 559,478 to 560,791
GFF3671
GFF3672 - Response regulator NasT, at 561,091 to 562,389
GFF3672
Position (kb) 559
560
561 Strain fitness (log2 ratio) -1
0
1 at 558.517 kb on + strand at 558.844 kb on - strand, within GFF3670 at 558.844 kb on - strand, within GFF3670 at 559.159 kb on - strand, within GFF3670 at 559.159 kb on - strand, within GFF3670 at 559.510 kb on - strand at 559.510 kb on - strand at 559.614 kb on + strand, within GFF3671 at 559.614 kb on + strand, within GFF3671 at 559.728 kb on + strand, within GFF3671 at 559.728 kb on + strand, within GFF3671 at 559.729 kb on - strand, within GFF3671 at 559.729 kb on - strand, within GFF3671 at 559.750 kb on - strand, within GFF3671 at 559.750 kb on - strand, within GFF3671 at 559.750 kb on - strand, within GFF3671 at 559.849 kb on - strand, within GFF3671 at 559.849 kb on - strand, within GFF3671 at 560.196 kb on + strand, within GFF3671 at 560.199 kb on + strand, within GFF3671 at 560.247 kb on + strand, within GFF3671 at 560.247 kb on + strand, within GFF3671 at 560.247 kb on + strand, within GFF3671 at 560.248 kb on - strand, within GFF3671 at 560.248 kb on - strand, within GFF3671 at 560.409 kb on + strand, within GFF3671 at 560.409 kb on + strand, within GFF3671 at 560.409 kb on + strand, within GFF3671 at 560.514 kb on + strand, within GFF3671 at 560.515 kb on - strand, within GFF3671 at 561.073 kb on - strand at 561.485 kb on + strand, within GFF3672 at 561.485 kb on + strand, within GFF3672 at 561.485 kb on + strand, within GFF3672 at 561.485 kb on + strand, within GFF3672 at 561.486 kb on - strand, within GFF3672
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 558,517 + -0.5 558,844 - GFF3670 0.34 -0.0 558,844 - GFF3670 0.34 -0.0 559,159 - GFF3670 0.68 -0.2 559,159 - GFF3670 0.68 -0.4 559,510 - -0.5 559,510 - -0.3 559,614 + GFF3671 0.10 -0.1 559,614 + GFF3671 0.10 +0.5 559,728 + GFF3671 0.19 -0.4 559,728 + GFF3671 0.19 -0.4 559,729 - GFF3671 0.19 +0.9 559,729 - GFF3671 0.19 -0.0 559,750 - GFF3671 0.21 +1.1 559,750 - GFF3671 0.21 -0.9 559,750 - GFF3671 0.21 +0.5 559,849 - GFF3671 0.28 +0.8 559,849 - GFF3671 0.28 +0.4 560,196 + GFF3671 0.55 +0.5 560,199 + GFF3671 0.55 +0.2 560,247 + GFF3671 0.59 +0.4 560,247 + GFF3671 0.59 +0.4 560,247 + GFF3671 0.59 -0.0 560,248 - GFF3671 0.59 -0.7 560,248 - GFF3671 0.59 +0.4 560,409 + GFF3671 0.71 +0.2 560,409 + GFF3671 0.71 -0.1 560,409 + GFF3671 0.71 +0.3 560,514 + GFF3671 0.79 +0.2 560,515 - GFF3671 0.79 +0.1 561,073 - -0.5 561,485 + GFF3672 0.30 -0.7 561,485 + GFF3672 0.30 +0.4 561,485 + GFF3672 0.30 -0.7 561,485 + GFF3672 0.30 -0.2 561,486 - GFF3672 0.30 +0.2
Or see this region's nucleotide sequence