Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3668 and GFF3669 are separated by 196 nucleotides GFF3669 and GFF3670 overlap by 4 nucleotides GFF3670 and GFF3671 are separated by 27 nucleotides
GFF3668 - Nitrate/nitrite transporter, at 556,319 to 557,533
GFF3668
GFF3669 - Nitrate ABC transporter, ATP-binding protein, at 557,730 to 558,536
GFF3669
GFF3670 - Cyanate ABC transporter, permease protein, at 558,533 to 559,450
GFF3670
GFF3671 - Nitrate ABC transporter, nitrate-binding protein, at 559,478 to 560,791
GFF3671
Position (kb) 557
558
559 Strain fitness (log2 ratio) -1
0
1 at 556.822 kb on - strand, within GFF3668 at 556.824 kb on + strand, within GFF3668 at 556.825 kb on - strand, within GFF3668 at 556.827 kb on + strand, within GFF3668 at 556.827 kb on + strand, within GFF3668 at 556.828 kb on - strand, within GFF3668 at 556.828 kb on - strand, within GFF3668 at 556.878 kb on + strand, within GFF3668 at 556.878 kb on + strand, within GFF3668 at 556.879 kb on - strand, within GFF3668 at 557.043 kb on + strand, within GFF3668 at 557.244 kb on + strand, within GFF3668 at 557.245 kb on - strand, within GFF3668 at 557.311 kb on - strand, within GFF3668 at 557.458 kb on + strand at 557.461 kb on - strand at 557.470 kb on - strand at 557.765 kb on - strand at 558.517 kb on + strand at 558.844 kb on - strand, within GFF3670 at 558.844 kb on - strand, within GFF3670 at 559.159 kb on - strand, within GFF3670 at 559.159 kb on - strand, within GFF3670 at 559.510 kb on - strand at 559.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 556,822 - GFF3668 0.41 +0.4 556,824 + GFF3668 0.42 +1.4 556,825 - GFF3668 0.42 -0.0 556,827 + GFF3668 0.42 -0.2 556,827 + GFF3668 0.42 +0.2 556,828 - GFF3668 0.42 +0.2 556,828 - GFF3668 0.42 +0.6 556,878 + GFF3668 0.46 +0.0 556,878 + GFF3668 0.46 +1.2 556,879 - GFF3668 0.46 -0.2 557,043 + GFF3668 0.60 +0.1 557,244 + GFF3668 0.76 +1.0 557,245 - GFF3668 0.76 -0.1 557,311 - GFF3668 0.82 -0.0 557,458 + +0.1 557,461 - -1.0 557,470 - +0.0 557,765 - +0.0 558,517 + -0.5 558,844 - GFF3670 0.34 -0.0 558,844 - GFF3670 0.34 -0.0 559,159 - GFF3670 0.68 -0.2 559,159 - GFF3670 0.68 -0.4 559,510 - -0.5 559,510 - -0.3
Or see this region's nucleotide sequence