Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3643

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
526,187	-		GFF3642	0.36	+0.4
526,876	+		GFF3642	0.90	-1.3
526,876	+		GFF3642	0.90	-0.7
526,876	+		GFF3642	0.90	+0.2
526,876	+		GFF3642	0.90	+0.3
526,877	-		GFF3642	0.90	-0.1
526,877	-		GFF3642	0.90	-0.5
526,877	-		GFF3642	0.90	-0.1
527,000	-				-0.0
527,000	-				-0.1
527,120	-		GFF3643	0.11	-0.6
527,444	-		GFF3643	0.39	-0.3
527,546	-		GFF3643	0.48	-0.0
528,064	+				-0.2
528,113	+				+0.1
528,234	+		GFF3644	0.10	+0.6
528,309	+		GFF3644	0.19	+0.1
528,310	-		GFF3644	0.19	+0.2
528,310	-		GFF3644	0.19	-0.5
528,310	-		GFF3644	0.19	-0.4
528,410	+		GFF3644	0.31	-0.5
528,918	+				+1.1
528,918	+				+0.1
528,919	-				+1.2
528,919	-				-0.1
528,921	+				+0.1
528,922	-				-0.8