Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3583 and GFF3584 are separated by 108 nucleotides GFF3584 and GFF3585 are separated by 18 nucleotides GFF3585 and GFF3586 overlap by 16 nucleotides GFF3586 and GFF3587 are separated by 9 nucleotides
GFF3583 - Alkaline phosphatase (EC 3.1.3.1), at 470,720 to 472,420
GFF3583
GFF3584 - FIG027190: Putative transmembrane protein, at 472,529 to 473,146
GFF3584
GFF3585 - hypothetical protein, at 473,165 to 473,284
GFF3585
GFF3586 - Probable signal peptide protein, at 473,269 to 473,688
GFF3586
GFF3587 - Formiminoglutamase (EC 3.5.3.8), at 473,698 to 474,639
GFF3587
Position (kb) 472
473
474 Strain fitness (log2 ratio) -1
0
1
2 at 471.627 kb on + strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.661 kb on - strand, within GFF3583 at 471.701 kb on + strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.870 kb on + strand, within GFF3583 at 472.213 kb on - strand, within GFF3583 at 472.213 kb on - strand, within GFF3583 at 472.213 kb on - strand, within GFF3583 at 472.254 kb on + strand at 472.255 kb on - strand at 472.459 kb on - strand at 472.890 kb on + strand, within GFF3584 at 472.891 kb on - strand, within GFF3584 at 473.160 kb on + strand at 473.160 kb on + strand at 473.161 kb on - strand at 473.178 kb on + strand, within GFF3585 at 473.179 kb on - strand, within GFF3585 at 473.179 kb on - strand, within GFF3585 at 473.179 kb on - strand, within GFF3585 at 473.205 kb on - strand, within GFF3585 at 473.205 kb on - strand, within GFF3585 at 473.205 kb on - strand, within GFF3585 at 473.235 kb on + strand, within GFF3585 at 473.235 kb on + strand, within GFF3585 at 473.235 kb on + strand, within GFF3585 at 473.236 kb on - strand, within GFF3585 at 473.236 kb on - strand, within GFF3585 at 473.238 kb on + strand, within GFF3585 at 473.238 kb on + strand, within GFF3585 at 473.239 kb on - strand, within GFF3585 at 473.244 kb on + strand, within GFF3585 at 473.479 kb on + strand, within GFF3586 at 473.483 kb on - strand, within GFF3586 at 473.500 kb on + strand, within GFF3586 at 473.504 kb on - strand, within GFF3586 at 473.504 kb on - strand, within GFF3586 at 473.521 kb on + strand, within GFF3586 at 473.522 kb on - strand, within GFF3586 at 473.524 kb on + strand, within GFF3586 at 473.524 kb on + strand, within GFF3586 at 473.525 kb on - strand, within GFF3586 at 473.525 kb on - strand, within GFF3586 at 473.525 kb on - strand, within GFF3586 at 473.525 kb on - strand, within GFF3586 at 473.542 kb on + strand, within GFF3586 at 473.543 kb on - strand, within GFF3586 at 473.543 kb on - strand, within GFF3586 at 473.543 kb on - strand, within GFF3586 at 473.545 kb on + strand, within GFF3586 at 473.563 kb on + strand, within GFF3586 at 473.563 kb on + strand, within GFF3586 at 473.563 kb on + strand, within GFF3586 at 473.563 kb on + strand, within GFF3586 at 473.566 kb on + strand, within GFF3586 at 473.566 kb on + strand, within GFF3586 at 473.567 kb on - strand, within GFF3586 at 473.585 kb on - strand, within GFF3586 at 473.585 kb on - strand, within GFF3586 at 473.663 kb on - strand at 473.934 kb on - strand, within GFF3587 at 474.024 kb on - strand, within GFF3587 at 474.098 kb on + strand, within GFF3587 at 474.099 kb on - strand, within GFF3587
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 471,627 + GFF3583 0.53 -0.3 471,627 + GFF3583 0.53 -0.1 471,627 + GFF3583 0.53 -0.7 471,660 + GFF3583 0.55 +0.2 471,660 + GFF3583 0.55 +0.9 471,660 + GFF3583 0.55 -1.3 471,661 - GFF3583 0.55 +0.8 471,701 + GFF3583 0.58 -0.7 471,703 - GFF3583 0.58 -0.1 471,703 - GFF3583 0.58 +1.2 471,703 - GFF3583 0.58 +0.1 471,703 - GFF3583 0.58 -0.8 471,870 + GFF3583 0.68 -0.5 472,213 - GFF3583 0.88 +0.3 472,213 - GFF3583 0.88 +0.0 472,213 - GFF3583 0.88 -0.5 472,254 + -0.3 472,255 - -0.2 472,459 - +0.9 472,890 + GFF3584 0.58 +0.1 472,891 - GFF3584 0.59 +1.1 473,160 + -0.0 473,160 + -0.7 473,161 - -0.0 473,178 + GFF3585 0.11 +0.2 473,179 - GFF3585 0.12 -0.3 473,179 - GFF3585 0.12 -0.1 473,179 - GFF3585 0.12 +0.0 473,205 - GFF3585 0.33 -0.6 473,205 - GFF3585 0.33 -0.8 473,205 - GFF3585 0.33 -0.1 473,235 + GFF3585 0.58 -1.0 473,235 + GFF3585 0.58 +0.2 473,235 + GFF3585 0.58 -0.3 473,236 - GFF3585 0.59 +0.7 473,236 - GFF3585 0.59 -0.1 473,238 + GFF3585 0.61 -0.7 473,238 + GFF3585 0.61 +0.0 473,239 - GFF3585 0.62 +0.1 473,244 + GFF3585 0.66 -0.4 473,479 + GFF3586 0.50 +0.4 473,483 - GFF3586 0.51 -0.7 473,500 + GFF3586 0.55 +0.8 473,504 - GFF3586 0.56 -1.3 473,504 - GFF3586 0.56 -0.1 473,521 + GFF3586 0.60 -0.2 473,522 - GFF3586 0.60 +0.0 473,524 + GFF3586 0.61 +0.0 473,524 + GFF3586 0.61 -0.0 473,525 - GFF3586 0.61 +2.5 473,525 - GFF3586 0.61 +0.4 473,525 - GFF3586 0.61 +0.2 473,525 - GFF3586 0.61 +0.1 473,542 + GFF3586 0.65 +1.0 473,543 - GFF3586 0.65 +0.7 473,543 - GFF3586 0.65 +0.5 473,543 - GFF3586 0.65 -0.5 473,545 + GFF3586 0.66 +0.0 473,563 + GFF3586 0.70 -0.2 473,563 + GFF3586 0.70 -0.0 473,563 + GFF3586 0.70 -0.4 473,563 + GFF3586 0.70 +0.0 473,566 + GFF3586 0.71 -0.1 473,566 + GFF3586 0.71 +0.9 473,567 - GFF3586 0.71 +1.8 473,585 - GFF3586 0.75 -0.5 473,585 - GFF3586 0.75 +0.8 473,663 - -0.3 473,934 - GFF3587 0.25 +0.3 474,024 - GFF3587 0.35 +0.9 474,098 + GFF3587 0.42 +0.2 474,099 - GFF3587 0.43 +0.7
Or see this region's nucleotide sequence