Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF332 and GFF333 are separated by 81 nucleotides
GFF332 - Putative membrane protein YeiH, at 351,824 to 352,930
GFF332
GFF333 - LysR family transcriptional regulator YeiE, at 353,012 to 353,977
GFF333
Position (kb) 353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 352.296 kb on + strand, within GFF332 at 352.296 kb on + strand, within GFF332 at 352.296 kb on + strand, within GFF332 at 352.366 kb on - strand, within GFF332 at 352.574 kb on + strand, within GFF332 at 352.574 kb on + strand, within GFF332 at 352.574 kb on + strand, within GFF332 at 352.601 kb on + strand, within GFF332 at 352.601 kb on + strand, within GFF332 at 352.602 kb on - strand, within GFF332 at 352.979 kb on + strand at 352.980 kb on - strand at 352.980 kb on - strand at 352.980 kb on - strand at 353.002 kb on + strand at 353.002 kb on + strand at 353.003 kb on - strand at 353.003 kb on - strand at 353.009 kb on - strand at 353.053 kb on + strand at 353.054 kb on - strand at 353.054 kb on - strand at 353.114 kb on - strand, within GFF333 at 353.369 kb on + strand, within GFF333 at 353.369 kb on + strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.575 kb on + strand, within GFF333 at 353.949 kb on + strand at 353.949 kb on + strand at 353.950 kb on - strand at 353.950 kb on - strand at 354.123 kb on + strand at 354.123 kb on + strand at 354.124 kb on - strand at 354.180 kb on + strand at 354.180 kb on + strand at 354.181 kb on - strand at 354.181 kb on - strand at 354.181 kb on - strand at 354.236 kb on + strand at 354.236 kb on + strand at 354.236 kb on + strand at 354.237 kb on - strand at 354.237 kb on - strand at 354.247 kb on + strand at 354.247 kb on + strand at 354.248 kb on - strand at 354.423 kb on + strand at 354.423 kb on + strand at 354.448 kb on + strand at 354.448 kb on + strand at 354.448 kb on + strand at 354.480 kb on - strand at 354.525 kb on - strand at 354.531 kb on - strand at 354.531 kb on - strand at 354.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 352,296 + GFF332 0.43 -0.2 352,296 + GFF332 0.43 -0.6 352,296 + GFF332 0.43 +0.7 352,366 - GFF332 0.49 -0.4 352,574 + GFF332 0.68 +1.0 352,574 + GFF332 0.68 -0.4 352,574 + GFF332 0.68 +0.5 352,601 + GFF332 0.70 +0.1 352,601 + GFF332 0.70 +0.6 352,602 - GFF332 0.70 -0.2 352,979 + -0.1 352,980 - +0.2 352,980 - +0.5 352,980 - +0.7 353,002 + -0.7 353,002 + +1.3 353,003 - -0.6 353,003 - +0.1 353,009 - -0.5 353,053 + -0.1 353,054 - -0.3 353,054 - -0.5 353,114 - GFF333 0.11 -0.6 353,369 + GFF333 0.37 +0.1 353,369 + GFF333 0.37 +0.1 353,370 - GFF333 0.37 +0.8 353,370 - GFF333 0.37 -2.0 353,370 - GFF333 0.37 -0.2 353,370 - GFF333 0.37 +1.3 353,370 - GFF333 0.37 +0.4 353,575 + GFF333 0.58 +0.7 353,949 + +1.3 353,949 + -0.1 353,950 - +0.4 353,950 - +0.3 354,123 + +0.1 354,123 + +0.3 354,124 - +0.9 354,180 + +0.3 354,180 + +1.1 354,181 - +1.3 354,181 - -0.3 354,181 - -0.1 354,236 + -0.4 354,236 + -0.1 354,236 + -0.6 354,237 - +0.6 354,237 - -0.4 354,247 + +0.5 354,247 + -0.1 354,248 - -1.7 354,423 + +0.2 354,423 + +0.5 354,448 + +0.1 354,448 + -1.1 354,448 + -2.2 354,480 - +0.2 354,525 - -0.3 354,531 - -0.1 354,531 - +0.1 354,531 - -0.5
Or see this region's nucleotide sequence