Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3321

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3319 and GFF3320 overlap by 23 nucleotidesGFF3320 and GFF3321 are separated by 7 nucleotidesGFF3321 and GFF3322 are separated by 12 nucleotides GFF3319 - S-formylglutathione hydrolase (EC 3.1.2.12), at 205,877 to 206,719 GFF3319 GFF3320 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 206,697 to 207,383 GFF3320 GFF3321 - Iron-sulfur cluster-binding protein, Rieske family, at 207,391 to 207,771 GFF3321 GFF3322 - Periplasmic serine proteases (ClpP class), at 207,784 to 208,764 GFF3322 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 206.448 kb on - strand, within GFF3319at 206.643 kb on - strandat 206.643 kb on - strandat 206.654 kb on + strandat 206.657 kb on + strandat 206.657 kb on + strandat 206.657 kb on + strandat 206.657 kb on + strandat 206.658 kb on - strandat 206.862 kb on + strand, within GFF3320at 206.862 kb on + strand, within GFF3320at 206.862 kb on + strand, within GFF3320at 206.863 kb on - strand, within GFF3320at 206.863 kb on - strand, within GFF3320at 206.959 kb on + strand, within GFF3320at 206.961 kb on + strand, within GFF3320at 206.961 kb on + strand, within GFF3320at 206.961 kb on + strand, within GFF3320at 206.961 kb on + strand, within GFF3320at 206.962 kb on - strand, within GFF3320at 206.962 kb on - strand, within GFF3320at 206.962 kb on - strand, within GFF3320at 206.962 kb on - strand, within GFF3320at 206.962 kb on - strand, within GFF3320at 207.286 kb on - strand, within GFF3320at 207.419 kb on - strandat 207.481 kb on + strand, within GFF3321at 207.481 kb on + strand, within GFF3321at 207.482 kb on - strand, within GFF3321at 207.517 kb on + strand, within GFF3321at 207.517 kb on + strand, within GFF3321at 207.518 kb on - strand, within GFF3321at 207.538 kb on + strand, within GFF3321at 207.539 kb on - strand, within GFF3321at 207.539 kb on - strand, within GFF3321at 207.643 kb on + strand, within GFF3321at 207.643 kb on + strand, within GFF3321at 207.643 kb on + strand, within GFF3321at 207.644 kb on - strand, within GFF3321at 207.644 kb on - strand, within GFF3321at 207.745 kb on + strandat 207.745 kb on + strandat 207.745 kb on + strandat 207.746 kb on - strandat 207.746 kb on - strandat 207.974 kb on - strand, within GFF3322at 208.069 kb on + strand, within GFF3322at 208.070 kb on - strand, within GFF3322at 208.070 kb on - strand, within GFF3322at 208.219 kb on + strand, within GFF3322at 208.219 kb on + strand, within GFF3322at 208.220 kb on - strand, within GFF3322at 208.255 kb on + strand, within GFF3322at 208.258 kb on + strand, within GFF3322at 208.259 kb on - strand, within GFF3322at 208.259 kb on - strand, within GFF3322at 208.259 kb on - strand, within GFF3322at 208.259 kb on - strand, within GFF3322at 208.259 kb on - strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.285 kb on + strand, within GFF3322at 208.286 kb on - strand, within GFF3322at 208.286 kb on - strand, within GFF3322at 208.286 kb on - strand, within GFF3322at 208.286 kb on - strand, within GFF3322at 208.286 kb on - strand, within GFF3322at 208.450 kb on + strand, within GFF3322at 208.451 kb on - strand, within GFF3322at 208.451 kb on - strand, within GFF3322at 208.451 kb on - strand, within GFF3322at 208.451 kb on - strand, within GFF3322at 208.616 kb on - strand, within GFF3322at 208.616 kb on - strand, within GFF3322at 208.616 kb on - strand, within GFF3322at 208.658 kb on - strand, within GFF3322

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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206,448 - GFF3319 0.68 -0.7
206,643 - +0.7
206,643 - -0.0
206,654 + -0.2
206,657 + +0.2
206,657 + +0.1
206,657 + -0.0
206,657 + +0.2
206,658 - +0.4
206,862 + GFF3320 0.24 +0.1
206,862 + GFF3320 0.24 +0.3
206,862 + GFF3320 0.24 +0.3
206,863 - GFF3320 0.24 +0.1
206,863 - GFF3320 0.24 -0.1
206,959 + GFF3320 0.38 -0.2
206,961 + GFF3320 0.38 -0.3
206,961 + GFF3320 0.38 +0.7
206,961 + GFF3320 0.38 +1.1
206,961 + GFF3320 0.38 -0.3
206,962 - GFF3320 0.39 -1.6
206,962 - GFF3320 0.39 -0.4
206,962 - GFF3320 0.39 +0.0
206,962 - GFF3320 0.39 +0.0
206,962 - GFF3320 0.39 -0.1
207,286 - GFF3320 0.86 -0.2
207,419 - -0.1
207,481 + GFF3321 0.24 +0.3
207,481 + GFF3321 0.24 -0.7
207,482 - GFF3321 0.24 -0.0
207,517 + GFF3321 0.33 +0.2
207,517 + GFF3321 0.33 +0.6
207,518 - GFF3321 0.33 -0.1
207,538 + GFF3321 0.39 -0.0
207,539 - GFF3321 0.39 +0.5
207,539 - GFF3321 0.39 +0.5
207,643 + GFF3321 0.66 -0.0
207,643 + GFF3321 0.66 +0.1
207,643 + GFF3321 0.66 +0.3
207,644 - GFF3321 0.66 +2.1
207,644 - GFF3321 0.66 -0.0
207,745 + +0.7
207,745 + -0.3
207,745 + -0.2
207,746 - -0.1
207,746 - -0.5
207,974 - GFF3322 0.19 -0.3
208,069 + GFF3322 0.29 -0.8
208,070 - GFF3322 0.29 -0.3
208,070 - GFF3322 0.29 +0.2
208,219 + GFF3322 0.44 -0.4
208,219 + GFF3322 0.44 -0.3
208,220 - GFF3322 0.44 -0.4
208,255 + GFF3322 0.48 -0.1
208,258 + GFF3322 0.48 -0.3
208,259 - GFF3322 0.48 -0.4
208,259 - GFF3322 0.48 +0.1
208,259 - GFF3322 0.48 +1.3
208,259 - GFF3322 0.48 +0.2
208,259 - GFF3322 0.48 -0.4
208,285 + GFF3322 0.51 +1.1
208,285 + GFF3322 0.51 +0.5
208,285 + GFF3322 0.51 -0.4
208,285 + GFF3322 0.51 -0.3
208,285 + GFF3322 0.51 -0.1
208,285 + GFF3322 0.51 -0.0
208,285 + GFF3322 0.51 +0.1
208,285 + GFF3322 0.51 -0.6
208,285 + GFF3322 0.51 +0.1
208,285 + GFF3322 0.51 -0.9
208,285 + GFF3322 0.51 +0.4
208,285 + GFF3322 0.51 +1.2
208,285 + GFF3322 0.51 -0.0
208,285 + GFF3322 0.51 +0.2
208,285 + GFF3322 0.51 +0.2
208,286 - GFF3322 0.51 -1.6
208,286 - GFF3322 0.51 -0.0
208,286 - GFF3322 0.51 -0.1
208,286 - GFF3322 0.51 -0.9
208,286 - GFF3322 0.51 -0.3
208,450 + GFF3322 0.68 +0.2
208,451 - GFF3322 0.68 +1.0
208,451 - GFF3322 0.68 -0.3
208,451 - GFF3322 0.68 -0.9
208,451 - GFF3322 0.68 -1.6
208,616 - GFF3322 0.85 +0.4
208,616 - GFF3322 0.85 -1.8
208,616 - GFF3322 0.85 -0.3
208,658 - GFF3322 0.89 +0.8

Or see this region's nucleotide sequence