Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3171 and GFF3172 are separated by 496 nucleotides GFF3172 and GFF3173 are separated by 284 nucleotides GFF3173 and GFF3174 are separated by 4 nucleotides GFF3174 and GFF3175 are separated by 265 nucleotides
GFF3171 - hypothetical protein, at 48,340 to 49,113
GFF3171
GFF3172 - hypothetical protein, at 49,610 to 49,753
GFF3172
GFF3173 - Sensor kinase, at 50,038 to 51,882
GFF3173
GFF3174 - response regulator, NarL-family, at 51,887 to 52,582
GFF3174
GFF3175 - cytochrome c family protein, at 52,848 to 54,902
GFF3175
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1 at 49.156 kb on + strand at 49.156 kb on + strand at 49.156 kb on + strand at 49.157 kb on - strand at 49.157 kb on - strand at 49.157 kb on - strand at 49.157 kb on - strand at 49.157 kb on - strand at 49.164 kb on + strand at 49.764 kb on - strand at 50.005 kb on + strand at 50.636 kb on + strand, within GFF3173 at 50.742 kb on - strand, within GFF3173 at 50.742 kb on - strand, within GFF3173 at 50.958 kb on - strand, within GFF3173 at 51.240 kb on - strand, within GFF3173 at 51.240 kb on - strand, within GFF3173 at 51.240 kb on - strand, within GFF3173 at 51.597 kb on - strand, within GFF3173 at 51.597 kb on - strand, within GFF3173 at 51.597 kb on - strand, within GFF3173 at 51.620 kb on + strand, within GFF3173 at 51.727 kb on + strand at 51.728 kb on - strand at 51.728 kb on - strand at 51.966 kb on + strand, within GFF3174 at 52.033 kb on - strand, within GFF3174 at 52.764 kb on + strand at 52.818 kb on + strand at 52.818 kb on + strand at 52.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 49,156 + -0.2 49,156 + +0.3 49,156 + +0.1 49,157 - +0.4 49,157 - -0.3 49,157 - -0.7 49,157 - -0.0 49,157 - +0.2 49,164 + +0.5 49,764 - +0.1 50,005 + +0.0 50,636 + GFF3173 0.32 -0.6 50,742 - GFF3173 0.38 +1.3 50,742 - GFF3173 0.38 -0.0 50,958 - GFF3173 0.50 +0.4 51,240 - GFF3173 0.65 -0.1 51,240 - GFF3173 0.65 +0.4 51,240 - GFF3173 0.65 +0.3 51,597 - GFF3173 0.84 +0.2 51,597 - GFF3173 0.84 -0.0 51,597 - GFF3173 0.84 +0.4 51,620 + GFF3173 0.86 -0.0 51,727 + +0.1 51,728 - -0.4 51,728 - -0.3 51,966 + GFF3174 0.11 +1.0 52,033 - GFF3174 0.21 -1.5 52,764 + -0.2 52,818 + +0.4 52,818 + -0.0 52,819 - -0.8
Or see this region's nucleotide sequence