Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3078

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3077 and GFF3078 are separated by 67 nucleotidesGFF3078 and GFF3079 are separated by 56 nucleotidesGFF3079 and GFF3080 are separated by 95 nucleotides GFF3077 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 153,807 to 155,426 GFF3077 GFF3078 - FIG00581584: hypothetical protein, at 155,494 to 156,303 GFF3078 GFF3079 - Transcriptional regulator, TetR family, at 156,360 to 156,932 GFF3079 GFF3080 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 157,028 to 157,489 GFF3080 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2at 154.775 kb on - strand, within GFF3077at 154.954 kb on + strand, within GFF3077at 154.954 kb on + strand, within GFF3077at 155.113 kb on + strand, within GFF3077at 155.173 kb on + strand, within GFF3077at 155.173 kb on + strand, within GFF3077at 155.174 kb on - strand, within GFF3077at 155.389 kb on + strandat 155.390 kb on - strandat 155.390 kb on - strandat 155.390 kb on - strandat 155.402 kb on - strandat 155.402 kb on - strandat 155.454 kb on + strandat 155.454 kb on + strandat 155.454 kb on + strandat 155.454 kb on + strandat 155.455 kb on - strandat 155.455 kb on - strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.472 kb on - strandat 155.548 kb on + strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.755 kb on + strand, within GFF3078at 155.756 kb on - strand, within GFF3078at 155.756 kb on - strand, within GFF3078at 155.756 kb on - strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.849 kb on - strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.173 kb on - strand, within GFF3078at 156.280 kb on + strandat 156.280 kb on + strandat 156.281 kb on - strandat 156.281 kb on - strandat 156.333 kb on + strandat 156.485 kb on + strand, within GFF3079at 156.485 kb on + strand, within GFF3079at 156.486 kb on - strand, within GFF3079at 156.486 kb on - strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.498 kb on + strand, within GFF3079at 156.498 kb on + strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.534 kb on + strand, within GFF3079at 156.534 kb on + strand, within GFF3079at 156.535 kb on - strand, within GFF3079at 156.535 kb on - strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.682 kb on - strand, within GFF3079at 156.682 kb on - strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.969 kb on - strandat 156.995 kb on + strandat 156.996 kb on - strandat 156.996 kb on - strandat 157.002 kb on - strandat 157.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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154,775 - GFF3077 0.60 +0.1
154,954 + GFF3077 0.71 -2.0
154,954 + GFF3077 0.71 +0.1
155,113 + GFF3077 0.81 +0.6
155,173 + GFF3077 0.84 -0.2
155,173 + GFF3077 0.84 +1.2
155,174 - GFF3077 0.84 +0.2
155,389 + +0.5
155,390 - +0.1
155,390 - +0.2
155,390 - +0.7
155,402 - +0.6
155,402 - -0.0
155,454 + -0.1
155,454 + -0.2
155,454 + -0.8
155,454 + -0.4
155,455 - -0.3
155,455 - -0.0
155,471 + +0.1
155,471 + -0.3
155,471 + -1.1
155,471 + -0.2
155,471 + -1.6
155,472 - +0.2
155,548 + -0.4
155,549 - -0.6
155,549 - +0.6
155,549 - -0.2
155,549 - -1.4
155,549 - -0.6
155,549 - -1.3
155,549 - -0.2
155,755 + GFF3078 0.32 +0.3
155,756 - GFF3078 0.32 -1.1
155,756 - GFF3078 0.32 +0.1
155,756 - GFF3078 0.32 -1.5
155,848 + GFF3078 0.44 -0.2
155,848 + GFF3078 0.44 +0.7
155,848 + GFF3078 0.44 -1.1
155,848 + GFF3078 0.44 +0.4
155,849 - GFF3078 0.44 -0.2
156,172 + GFF3078 0.84 -0.1
156,172 + GFF3078 0.84 +0.3
156,172 + GFF3078 0.84 +0.4
156,172 + GFF3078 0.84 +0.2
156,173 - GFF3078 0.84 +0.2
156,280 + -0.4
156,280 + +0.3
156,281 - -2.3
156,281 - +0.6
156,333 + -0.3
156,485 + GFF3079 0.22 -0.4
156,485 + GFF3079 0.22 -0.7
156,486 - GFF3079 0.22 -0.2
156,486 - GFF3079 0.22 -0.5
156,492 + GFF3079 0.23 +0.0
156,492 + GFF3079 0.23 -0.3
156,492 + GFF3079 0.23 +0.2
156,492 + GFF3079 0.23 -0.1
156,492 + GFF3079 0.23 -0.3
156,492 + GFF3079 0.23 -0.6
156,492 + GFF3079 0.23 -0.9
156,492 + GFF3079 0.23 +0.7
156,492 + GFF3079 0.23 +1.1
156,493 - GFF3079 0.23 +0.9
156,493 - GFF3079 0.23 +0.6
156,493 - GFF3079 0.23 -0.6
156,493 - GFF3079 0.23 +1.1
156,493 - GFF3079 0.23 +0.2
156,498 + GFF3079 0.24 +0.3
156,498 + GFF3079 0.24 +0.6
156,499 - GFF3079 0.24 -0.1
156,499 - GFF3079 0.24 -0.1
156,499 - GFF3079 0.24 +0.4
156,499 - GFF3079 0.24 +0.9
156,499 - GFF3079 0.24 +0.1
156,534 + GFF3079 0.30 -0.5
156,534 + GFF3079 0.30 +0.3
156,535 - GFF3079 0.31 +0.4
156,535 - GFF3079 0.31 -0.2
156,681 + GFF3079 0.56 -0.9
156,681 + GFF3079 0.56 +0.2
156,681 + GFF3079 0.56 +0.2
156,681 + GFF3079 0.56 +1.1
156,682 - GFF3079 0.56 +0.2
156,682 - GFF3079 0.56 -0.0
156,684 + GFF3079 0.57 -0.0
156,684 + GFF3079 0.57 +0.3
156,684 + GFF3079 0.57 +0.4
156,685 - GFF3079 0.57 +0.1
156,685 - GFF3079 0.57 +0.2
156,685 - GFF3079 0.57 -0.1
156,685 - GFF3079 0.57 +0.7
156,685 - GFF3079 0.57 -2.0
156,969 - +0.4
156,995 + +0.3
156,996 - +0.1
156,996 - -1.1
157,002 - +1.1
157,002 - +2.0

Or see this region's nucleotide sequence