Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF285 and GFF286 are separated by 106 nucleotides GFF286 and GFF287 are separated by 66 nucleotides GFF287 and GFF288 are separated by 8 nucleotides GFF288 and GFF289 are separated by 52 nucleotides
GFF285 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 300,732 to 302,186
GFF285
GFF286 - Outer membrane lipoprotein omp16 precursor, at 302,293 to 303,024
GFF286
GFF287 - Oxidoreductase, at 303,091 to 304,134
GFF287
GFF288 - Transcriptional regulator, at 304,143 to 304,634
GFF288
GFF289 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY, at 304,687 to 305,310
GFF289
Position (kb) 303
304
305 Strain fitness (log2 ratio) -1
0
1
2 at 302.151 kb on + strand at 302.151 kb on + strand at 302.151 kb on + strand at 302.152 kb on - strand at 302.152 kb on - strand at 302.327 kb on + strand at 303.033 kb on + strand at 303.033 kb on + strand at 303.033 kb on + strand at 303.034 kb on - strand at 303.034 kb on - strand at 303.035 kb on + strand at 303.074 kb on + strand at 303.074 kb on + strand at 303.075 kb on - strand at 303.075 kb on - strand at 303.078 kb on + strand at 303.079 kb on - strand at 303.079 kb on - strand at 303.084 kb on + strand at 303.084 kb on + strand at 303.084 kb on + strand at 303.085 kb on - strand at 303.085 kb on - strand at 303.085 kb on - strand at 303.247 kb on + strand, within GFF287 at 303.247 kb on + strand, within GFF287 at 303.248 kb on - strand, within GFF287 at 303.248 kb on - strand, within GFF287 at 303.248 kb on - strand, within GFF287 at 303.517 kb on + strand, within GFF287 at 303.517 kb on + strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.707 kb on - strand, within GFF287 at 303.728 kb on - strand, within GFF287 at 303.728 kb on - strand, within GFF287 at 303.817 kb on + strand, within GFF287 at 303.817 kb on + strand, within GFF287 at 303.817 kb on + strand, within GFF287 at 303.818 kb on - strand, within GFF287 at 303.863 kb on - strand, within GFF287 at 303.863 kb on - strand, within GFF287 at 303.863 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.982 kb on + strand, within GFF287 at 304.224 kb on + strand, within GFF288 at 304.225 kb on - strand, within GFF288 at 304.225 kb on - strand, within GFF288 at 304.446 kb on + strand, within GFF288 at 304.447 kb on - strand, within GFF288 at 304.632 kb on + strand at 304.633 kb on - strand at 304.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 302,151 + -0.2 302,151 + -0.9 302,151 + +0.0 302,152 - -0.6 302,152 - -0.2 302,327 + -0.9 303,033 + +0.1 303,033 + -0.4 303,033 + -0.3 303,034 - +0.3 303,034 - -0.2 303,035 + -0.3 303,074 + -0.3 303,074 + +0.6 303,075 - +0.5 303,075 - +0.3 303,078 + +0.2 303,079 - -0.1 303,079 - -0.5 303,084 + -0.4 303,084 + -0.1 303,084 + -0.3 303,085 - -0.0 303,085 - +0.3 303,085 - +0.2 303,247 + GFF287 0.15 +0.7 303,247 + GFF287 0.15 -0.6 303,248 - GFF287 0.15 -0.3 303,248 - GFF287 0.15 -0.3 303,248 - GFF287 0.15 -1.2 303,517 + GFF287 0.41 +0.5 303,517 + GFF287 0.41 +0.2 303,518 - GFF287 0.41 -0.2 303,518 - GFF287 0.41 -1.6 303,518 - GFF287 0.41 -0.3 303,518 - GFF287 0.41 +0.2 303,707 - GFF287 0.59 -0.6 303,728 - GFF287 0.61 +1.2 303,728 - GFF287 0.61 -0.3 303,817 + GFF287 0.70 +2.0 303,817 + GFF287 0.70 +0.5 303,817 + GFF287 0.70 +0.5 303,818 - GFF287 0.70 -0.7 303,863 - GFF287 0.74 +0.6 303,863 - GFF287 0.74 +0.2 303,863 - GFF287 0.74 +1.6 303,923 - GFF287 0.80 +0.2 303,923 - GFF287 0.80 +1.1 303,923 - GFF287 0.80 +0.0 303,923 - GFF287 0.80 -0.2 303,982 + GFF287 0.85 +0.8 304,224 + GFF288 0.16 +1.0 304,225 - GFF288 0.17 +0.8 304,225 - GFF288 0.17 +1.5 304,446 + GFF288 0.62 +0.9 304,447 - GFF288 0.62 +0.7 304,632 + -0.1 304,633 - +0.2 304,633 - -0.1
Or see this region's nucleotide sequence