Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2862 and GFF2863 are separated by 17 nucleotides GFF2863 and GFF2864 overlap by 4 nucleotides GFF2864 and GFF2865 overlap by 7 nucleotides
GFF2862 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 449,947 to 450,948
GFF2862
GFF2863 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 450,966 to 452,033
GFF2863
GFF2864 - Creatinine amidohydrolase (EC 3.5.2.10), at 452,030 to 452,875
GFF2864
GFF2865 - Cytosine deaminase (EC 3.5.4.1), at 452,869 to 454,155
GFF2865
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -1
0
1 at 450.071 kb on + strand, within GFF2862 at 450.073 kb on + strand, within GFF2862 at 450.074 kb on - strand, within GFF2862 at 450.100 kb on + strand, within GFF2862 at 450.125 kb on - strand, within GFF2862 at 450.457 kb on + strand, within GFF2862 at 450.457 kb on + strand, within GFF2862 at 450.458 kb on - strand, within GFF2862 at 450.499 kb on + strand, within GFF2862 at 450.500 kb on - strand, within GFF2862 at 450.568 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.589 kb on + strand, within GFF2862 at 450.589 kb on + strand, within GFF2862 at 450.590 kb on - strand, within GFF2862 at 450.779 kb on - strand, within GFF2862 at 451.105 kb on - strand, within GFF2863 at 451.204 kb on - strand, within GFF2863 at 451.263 kb on + strand, within GFF2863 at 451.263 kb on + strand, within GFF2863 at 451.264 kb on - strand, within GFF2863 at 451.644 kb on + strand, within GFF2863 at 451.644 kb on + strand, within GFF2863 at 451.645 kb on - strand, within GFF2863 at 451.645 kb on - strand, within GFF2863 at 451.645 kb on - strand, within GFF2863 at 451.758 kb on + strand, within GFF2863 at 451.903 kb on - strand, within GFF2863 at 451.903 kb on - strand, within GFF2863 at 452.672 kb on + strand, within GFF2864 at 452.673 kb on - strand, within GFF2864 at 452.681 kb on + strand, within GFF2864 at 452.681 kb on + strand, within GFF2864
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 450,071 + GFF2862 0.12 +0.3 450,073 + GFF2862 0.13 +0.0 450,074 - GFF2862 0.13 -0.4 450,100 + GFF2862 0.15 +0.5 450,125 - GFF2862 0.18 +0.8 450,457 + GFF2862 0.51 +0.7 450,457 + GFF2862 0.51 +0.3 450,458 - GFF2862 0.51 -0.6 450,499 + GFF2862 0.55 +0.3 450,500 - GFF2862 0.55 -0.4 450,568 + GFF2862 0.62 +1.1 450,583 + GFF2862 0.63 -0.6 450,583 + GFF2862 0.63 -0.4 450,583 + GFF2862 0.63 -0.5 450,583 + GFF2862 0.63 +0.2 450,583 + GFF2862 0.63 -1.4 450,583 + GFF2862 0.63 -0.3 450,584 - GFF2862 0.64 -0.1 450,584 - GFF2862 0.64 -0.7 450,584 - GFF2862 0.64 +1.0 450,589 + GFF2862 0.64 +0.2 450,589 + GFF2862 0.64 +0.5 450,590 - GFF2862 0.64 -0.7 450,779 - GFF2862 0.83 +0.1 451,105 - GFF2863 0.13 +0.1 451,204 - GFF2863 0.22 -0.3 451,263 + GFF2863 0.28 +0.6 451,263 + GFF2863 0.28 +0.4 451,264 - GFF2863 0.28 +0.4 451,644 + GFF2863 0.63 +0.2 451,644 + GFF2863 0.63 -1.0 451,645 - GFF2863 0.64 -0.4 451,645 - GFF2863 0.64 +0.2 451,645 - GFF2863 0.64 +0.3 451,758 + GFF2863 0.74 -0.1 451,903 - GFF2863 0.88 -0.7 451,903 - GFF2863 0.88 -0.6 452,672 + GFF2864 0.76 -0.5 452,673 - GFF2864 0.76 -0.8 452,681 + GFF2864 0.77 +0.4 452,681 + GFF2864 0.77 +0.3
Or see this region's nucleotide sequence