Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2859 and GFF2860 are separated by 139 nucleotides GFF2860 and GFF2861 overlap by 4 nucleotides GFF2861 and GFF2862 are separated by 46 nucleotides
GFF2859 - LysR-family transcriptional regulator, at 447,144 to 448,076
GFF2859
GFF2860 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 448,216 to 449,082
GFF2860
GFF2861 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 449,079 to 449,900
GFF2861
GFF2862 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 449,947 to 450,948
GFF2862
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1 at 447.367 kb on + strand, within GFF2859 at 447.367 kb on + strand, within GFF2859 at 447.826 kb on + strand, within GFF2859 at 448.033 kb on + strand at 448.034 kb on - strand at 448.077 kb on - strand at 448.115 kb on - strand at 448.117 kb on + strand at 448.117 kb on + strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.128 kb on + strand at 448.289 kb on - strand at 448.901 kb on - strand, within GFF2860 at 448.987 kb on - strand, within GFF2860 at 449.011 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.021 kb on - strand at 449.215 kb on - strand, within GFF2861 at 449.397 kb on + strand, within GFF2861 at 449.397 kb on + strand, within GFF2861 at 449.398 kb on - strand, within GFF2861 at 449.581 kb on - strand, within GFF2861 at 449.637 kb on + strand, within GFF2861 at 449.739 kb on + strand, within GFF2861 at 449.739 kb on + strand, within GFF2861 at 450.071 kb on + strand, within GFF2862 at 450.073 kb on + strand, within GFF2862 at 450.074 kb on - strand, within GFF2862
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 447,367 + GFF2859 0.24 +0.1 447,367 + GFF2859 0.24 +0.3 447,826 + GFF2859 0.73 +0.3 448,033 + -0.8 448,034 - +0.2 448,077 - +1.0 448,115 - -2.2 448,117 + -0.9 448,117 + -0.4 448,118 - -0.2 448,118 - -0.3 448,118 - +0.2 448,118 - +0.1 448,128 + -0.7 448,289 - +0.6 448,901 - GFF2860 0.79 -0.2 448,987 - GFF2860 0.89 +0.3 449,011 + -0.2 449,020 + -0.1 449,020 + -1.3 449,020 + +0.5 449,020 + -0.3 449,020 + -0.3 449,021 - -0.1 449,215 - GFF2861 0.17 +0.5 449,397 + GFF2861 0.39 -0.1 449,397 + GFF2861 0.39 -0.6 449,398 - GFF2861 0.39 -0.5 449,581 - GFF2861 0.61 -0.7 449,637 + GFF2861 0.68 +0.4 449,739 + GFF2861 0.80 -0.1 449,739 + GFF2861 0.80 +0.1 450,071 + GFF2862 0.12 +0.3 450,073 + GFF2862 0.13 +0.0 450,074 - GFF2862 0.13 -0.4
Or see this region's nucleotide sequence