Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2838 and GFF2839 are separated by 6 nucleotides GFF2839 and GFF2840 are separated by 12 nucleotides GFF2840 and GFF2841 are separated by 83 nucleotides GFF2841 and GFF2842 are separated by 3 nucleotides
GFF2838 - putative exported protein, at 430,435 to 431,412
GFF2838
GFF2839 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 431,419 to 432,210
GFF2839
GFF2840 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 432,223 to 433,194
GFF2840
GFF2841 - Transcriptional regulator, TetR family, at 433,278 to 433,907
GFF2841
GFF2842 - Enoyl-CoA hydratase (EC 4.2.1.17), at 433,911 to 434,726
GFF2842
Position (kb) 432
433
434 Strain fitness (log2 ratio) -1
0
1
2 at 431.728 kb on + strand, within GFF2839 at 431.728 kb on + strand, within GFF2839 at 431.728 kb on + strand, within GFF2839 at 431.728 kb on + strand, within GFF2839 at 431.728 kb on + strand, within GFF2839 at 431.729 kb on - strand, within GFF2839 at 431.729 kb on - strand, within GFF2839 at 431.729 kb on - strand, within GFF2839 at 431.729 kb on - strand, within GFF2839 at 431.803 kb on + strand, within GFF2839 at 431.803 kb on + strand, within GFF2839 at 431.872 kb on + strand, within GFF2839 at 431.872 kb on + strand, within GFF2839 at 431.873 kb on - strand, within GFF2839 at 431.873 kb on - strand, within GFF2839 at 431.905 kb on + strand, within GFF2839 at 431.906 kb on - strand, within GFF2839 at 431.906 kb on - strand, within GFF2839 at 432.385 kb on + strand, within GFF2840 at 432.643 kb on + strand, within GFF2840 at 432.643 kb on + strand, within GFF2840 at 432.644 kb on - strand, within GFF2840 at 432.644 kb on - strand, within GFF2840 at 432.644 kb on - strand, within GFF2840 at 432.644 kb on - strand, within GFF2840 at 432.644 kb on - strand, within GFF2840 at 432.806 kb on - strand, within GFF2840 at 432.806 kb on - strand, within GFF2840 at 432.838 kb on + strand, within GFF2840 at 432.838 kb on + strand, within GFF2840 at 432.934 kb on + strand, within GFF2840 at 433.030 kb on + strand, within GFF2840 at 433.030 kb on + strand, within GFF2840 at 433.030 kb on + strand, within GFF2840 at 433.030 kb on + strand, within GFF2840 at 433.030 kb on + strand, within GFF2840 at 433.031 kb on - strand, within GFF2840 at 433.031 kb on - strand, within GFF2840 at 433.031 kb on - strand, within GFF2840 at 433.031 kb on - strand, within GFF2840 at 433.246 kb on - strand at 433.246 kb on - strand at 433.248 kb on - strand at 433.248 kb on - strand at 433.275 kb on + strand at 433.446 kb on + strand, within GFF2841 at 433.446 kb on + strand, within GFF2841 at 433.447 kb on - strand, within GFF2841 at 433.447 kb on - strand, within GFF2841 at 433.476 kb on + strand, within GFF2841 at 433.476 kb on + strand, within GFF2841 at 433.477 kb on - strand, within GFF2841 at 433.477 kb on - strand, within GFF2841 at 433.477 kb on - strand, within GFF2841 at 433.593 kb on + strand, within GFF2841 at 433.593 kb on + strand, within GFF2841 at 433.593 kb on + strand, within GFF2841 at 433.593 kb on + strand, within GFF2841 at 433.594 kb on - strand, within GFF2841 at 433.594 kb on - strand, within GFF2841 at 433.608 kb on + strand, within GFF2841 at 433.608 kb on + strand, within GFF2841 at 433.608 kb on + strand, within GFF2841 at 433.609 kb on - strand, within GFF2841 at 433.629 kb on + strand, within GFF2841 at 433.629 kb on + strand, within GFF2841 at 433.630 kb on - strand, within GFF2841 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 431,728 + GFF2839 0.39 +0.6 431,728 + GFF2839 0.39 +0.1 431,728 + GFF2839 0.39 -0.1 431,728 + GFF2839 0.39 +0.3 431,728 + GFF2839 0.39 -0.6 431,729 - GFF2839 0.39 +1.2 431,729 - GFF2839 0.39 -0.1 431,729 - GFF2839 0.39 +1.0 431,729 - GFF2839 0.39 +1.1 431,803 + GFF2839 0.48 +0.2 431,803 + GFF2839 0.48 +0.1 431,872 + GFF2839 0.57 +0.6 431,872 + GFF2839 0.57 -0.0 431,873 - GFF2839 0.57 -1.0 431,873 - GFF2839 0.57 -0.6 431,905 + GFF2839 0.61 +0.2 431,906 - GFF2839 0.61 +0.2 431,906 - GFF2839 0.61 +1.0 432,385 + GFF2840 0.17 +0.1 432,643 + GFF2840 0.43 -0.2 432,643 + GFF2840 0.43 +0.6 432,644 - GFF2840 0.43 +0.3 432,644 - GFF2840 0.43 +0.7 432,644 - GFF2840 0.43 +2.1 432,644 - GFF2840 0.43 +0.3 432,644 - GFF2840 0.43 +0.6 432,806 - GFF2840 0.60 +0.7 432,806 - GFF2840 0.60 +0.1 432,838 + GFF2840 0.63 +0.5 432,838 + GFF2840 0.63 -0.2 432,934 + GFF2840 0.73 -0.0 433,030 + GFF2840 0.83 +0.5 433,030 + GFF2840 0.83 +0.1 433,030 + GFF2840 0.83 +0.1 433,030 + GFF2840 0.83 +0.0 433,030 + GFF2840 0.83 +0.5 433,031 - GFF2840 0.83 -0.6 433,031 - GFF2840 0.83 -0.5 433,031 - GFF2840 0.83 +0.3 433,031 - GFF2840 0.83 -0.5 433,246 - -0.1 433,246 - -0.3 433,248 - +0.1 433,248 - +0.1 433,275 + +0.3 433,446 + GFF2841 0.27 +0.8 433,446 + GFF2841 0.27 +0.3 433,447 - GFF2841 0.27 -0.6 433,447 - GFF2841 0.27 -0.5 433,476 + GFF2841 0.31 -0.7 433,476 + GFF2841 0.31 -0.2 433,477 - GFF2841 0.32 +0.0 433,477 - GFF2841 0.32 +0.1 433,477 - GFF2841 0.32 -0.8 433,593 + GFF2841 0.50 +0.4 433,593 + GFF2841 0.50 -0.5 433,593 + GFF2841 0.50 +0.2 433,593 + GFF2841 0.50 -0.4 433,594 - GFF2841 0.50 +0.5 433,594 - GFF2841 0.50 +0.2 433,608 + GFF2841 0.52 -0.1 433,608 + GFF2841 0.52 -0.4 433,608 + GFF2841 0.52 -0.1 433,609 - GFF2841 0.53 -0.1 433,629 + GFF2841 0.56 +0.4 433,629 + GFF2841 0.56 -1.1 433,630 - GFF2841 0.56 -0.1 434,109 + GFF2842 0.24 +0.5 434,109 + GFF2842 0.24 +0.1 434,109 + GFF2842 0.24 +0.1 434,109 + GFF2842 0.24 +0.8 434,109 + GFF2842 0.24 -0.5 434,109 + GFF2842 0.24 -1.7
Or see this region's nucleotide sequence