Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2799 and GFF2800 are separated by 13 nucleotides GFF2800 and GFF2801 are separated by 10 nucleotides
GFF2799 - Predicted thiazole transporter ThiU, at 396,490 to 397,758
GFF2799
GFF2800 - L-sorbosone dehydrogenase, at 397,772 to 398,983
GFF2800
GFF2801 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-), at 398,994 to 400,097
GFF2801
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1 at 397.045 kb on + strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.046 kb on - strand, within GFF2799 at 397.046 kb on - strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.187 kb on - strand, within GFF2799 at 397.187 kb on - strand, within GFF2799 at 397.198 kb on + strand, within GFF2799 at 397.198 kb on + strand, within GFF2799 at 397.225 kb on + strand, within GFF2799 at 397.226 kb on - strand, within GFF2799 at 397.226 kb on - strand, within GFF2799 at 397.561 kb on + strand, within GFF2799 at 397.562 kb on - strand, within GFF2799 at 397.583 kb on - strand, within GFF2799 at 397.672 kb on + strand at 397.673 kb on - strand at 397.987 kb on - strand, within GFF2800 at 398.175 kb on + strand, within GFF2800 at 398.175 kb on + strand, within GFF2800 at 398.388 kb on + strand, within GFF2800 at 398.388 kb on + strand, within GFF2800 at 398.389 kb on - strand, within GFF2800 at 398.625 kb on + strand, within GFF2800 at 398.626 kb on - strand, within GFF2800 at 398.919 kb on + strand at 398.920 kb on - strand at 399.025 kb on + strand at 399.026 kb on - strand at 399.026 kb on - strand at 399.065 kb on - strand at 399.065 kb on - strand at 399.085 kb on + strand at 399.329 kb on - strand, within GFF2801 at 399.562 kb on + strand, within GFF2801 at 399.562 kb on + strand, within GFF2801 at 399.562 kb on + strand, within GFF2801 at 399.563 kb on - strand, within GFF2801
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 397,045 + GFF2799 0.44 +0.8 397,045 + GFF2799 0.44 +0.2 397,045 + GFF2799 0.44 -0.0 397,045 + GFF2799 0.44 +0.2 397,046 - GFF2799 0.44 -1.0 397,046 - GFF2799 0.44 -0.2 397,186 + GFF2799 0.55 +0.4 397,186 + GFF2799 0.55 -0.1 397,186 + GFF2799 0.55 +0.1 397,186 + GFF2799 0.55 +0.3 397,187 - GFF2799 0.55 -1.1 397,187 - GFF2799 0.55 -0.6 397,198 + GFF2799 0.56 +0.3 397,198 + GFF2799 0.56 -0.2 397,225 + GFF2799 0.58 -0.8 397,226 - GFF2799 0.58 -0.1 397,226 - GFF2799 0.58 +0.4 397,561 + GFF2799 0.84 +0.9 397,562 - GFF2799 0.84 -0.0 397,583 - GFF2799 0.86 +0.2 397,672 + +0.2 397,673 - -1.0 397,987 - GFF2800 0.18 -1.8 398,175 + GFF2800 0.33 +0.4 398,175 + GFF2800 0.33 -1.7 398,388 + GFF2800 0.51 +0.3 398,388 + GFF2800 0.51 -0.2 398,389 - GFF2800 0.51 +0.6 398,625 + GFF2800 0.70 -0.7 398,626 - GFF2800 0.70 +0.4 398,919 + +0.5 398,920 - -0.1 399,025 + +1.5 399,026 - -0.2 399,026 - -1.1 399,065 - -0.3 399,065 - -0.8 399,085 + +0.1 399,329 - GFF2801 0.30 +0.7 399,562 + GFF2801 0.51 -0.1 399,562 + GFF2801 0.51 -0.1 399,562 + GFF2801 0.51 -0.5 399,563 - GFF2801 0.52 +1.0
Or see this region's nucleotide sequence