Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF28

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
25,057	+				-0.3
25,057	+				-0.6
25,057	+				-0.1
25,057	+				+0.5
25,058	-				+0.0
25,294	+		GFF27	0.15	+0.7
25,295	-		GFF27	0.15	-2.0
25,321	+		GFF27	0.19	+0.3
25,322	-		GFF27	0.19	-0.5
25,385	-		GFF27	0.27	-0.4
25,390	+		GFF27	0.28	-0.2
25,390	+		GFF27	0.28	+0.4
25,391	-		GFF27	0.28	+0.0
25,391	-		GFF27	0.28	+0.5
25,501	+		GFF27	0.42	+0.8
25,501	+		GFF27	0.42	-0.3
25,501	+		GFF27	0.42	-0.4
25,501	+		GFF27	0.42	-0.6
25,502	-		GFF27	0.42	-0.5
25,502	-		GFF27	0.42	-0.0
25,570	+		GFF27	0.51	-2.1
25,570	+		GFF27	0.51	+0.5
25,570	+		GFF27	0.51	-0.1
25,571	-		GFF27	0.52	+0.8
25,726	+		GFF27	0.72	-0.2
25,726	+		GFF27	0.72	+0.4
25,727	-		GFF27	0.72	+0.4
25,727	-		GFF27	0.72	+1.0
25,852	+		GFF27	0.88	-0.4
25,853	-		GFF27	0.88	+1.0
26,313	-		GFF28	0.68	-0.5
26,313	-		GFF28	0.68	-0.1
26,313	-		GFF28	0.68	-1.6
26,378	+		GFF28	0.80	+0.1
26,532	-				-0.3
26,547	+				+1.8
26,555	-				-0.7
26,657	+				-0.5
26,658	-				-0.7
26,658	-				-0.1
26,658	-				+0.1
26,963	+		GFF29	0.66	+1.0
26,963	+		GFF29	0.66	-1.5
26,964	-		GFF29	0.66	-0.3
26,964	-		GFF29	0.66	-1.4
27,236	+				+0.3
27,237	-				-0.1
27,237	-				+0.1
27,413	+		GFF30	0.20	+0.9
27,414	-		GFF30	0.20	+0.8
27,428	+		GFF30	0.21	-0.2
27,429	-		GFF30	0.21	-0.9