Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2515

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2514 and GFF2515 are separated by 409 nucleotidesGFF2515 and GFF2516 are separated by 0 nucleotidesGFF2516 and GFF2517 overlap by 43 nucleotidesGFF2517 and GFF2518 are separated by 26 nucleotides GFF2514 - Membrane protein TerC, possibly involved in tellurium resistance, at 99,616 to 100,368 GFF2514 GFF2515 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 100,778 to 101,200 GFF2515 GFF2516 - CDP-abequose synthase (Fragment), at 101,201 to 101,866 GFF2516 GFF2517 - hypothetical protein, at 101,824 to 101,949 GFF2517 GFF2518 - Adenylosuccinate lyase (EC 4.3.2.2), at 101,976 to 103,403 GFF2518 Position (kb) 100 101 102Strain fitness (log2 ratio) -1 0 1at 100.071 kb on + strand, within GFF2514at 100.368 kb on + strandat 100.369 kb on - strandat 100.369 kb on - strandat 100.369 kb on - strandat 100.369 kb on - strandat 100.369 kb on - strandat 100.369 kb on - strandat 100.369 kb on - strandat 100.611 kb on + strandat 100.611 kb on + strandat 100.612 kb on - strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.659 kb on + strandat 100.660 kb on - strandat 100.660 kb on - strandat 100.660 kb on - strandat 100.686 kb on - strandat 100.729 kb on + strandat 100.730 kb on - strandat 100.730 kb on - strandat 100.750 kb on - strandat 100.820 kb on + strandat 100.820 kb on + strandat 100.820 kb on + strandat 100.821 kb on - strand, within GFF2515at 100.821 kb on - strand, within GFF2515at 100.821 kb on - strand, within GFF2515at 100.892 kb on + strand, within GFF2515at 100.892 kb on + strand, within GFF2515at 100.893 kb on - strand, within GFF2515at 100.977 kb on - strand, within GFF2515at 100.977 kb on - strand, within GFF2515at 100.977 kb on - strand, within GFF2515at 101.159 kb on + strandat 101.160 kb on - strandat 101.217 kb on + strandat 101.218 kb on - strandat 101.218 kb on - strandat 101.218 kb on - strandat 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.685 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.716 kb on - strand, within GFF2516at 101.716 kb on - strand, within GFF2516at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 101.913 kb on - strand, within GFF2517

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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100,071 + GFF2514 0.60 +0.1
100,368 + +0.0
100,369 - -0.6
100,369 - +0.2
100,369 - -0.8
100,369 - -1.3
100,369 - +0.2
100,369 - -1.5
100,369 - +0.2
100,611 + -0.6
100,611 + -0.5
100,612 - +0.5
100,659 + -0.1
100,659 + +0.2
100,659 + -0.2
100,659 + +0.8
100,659 + +0.1
100,659 + +0.3
100,659 + +0.1
100,659 + -0.7
100,659 + +0.3
100,660 - -0.1
100,660 - -0.1
100,660 - -1.1
100,686 - -0.3
100,729 + +0.2
100,730 - -0.3
100,730 - +0.7
100,750 - -0.0
100,820 + +0.6
100,820 + -0.9
100,820 + +0.5
100,821 - GFF2515 0.10 +0.8
100,821 - GFF2515 0.10 +0.9
100,821 - GFF2515 0.10 +0.8
100,892 + GFF2515 0.27 +0.6
100,892 + GFF2515 0.27 +0.8
100,893 - GFF2515 0.27 +0.2
100,977 - GFF2515 0.47 -0.5
100,977 - GFF2515 0.47 +0.2
100,977 - GFF2515 0.47 +0.7
101,159 + +0.3
101,160 - -0.2
101,217 + -1.0
101,218 - -0.5
101,218 - +0.3
101,218 - +0.1
101,388 + GFF2516 0.28 +0.2
101,388 + GFF2516 0.28 -0.1
101,388 + GFF2516 0.28 +0.7
101,388 + GFF2516 0.28 -0.1
101,388 + GFF2516 0.28 -0.9
101,388 + GFF2516 0.28 -0.7
101,388 + GFF2516 0.28 -0.4
101,389 - GFF2516 0.28 -0.3
101,389 - GFF2516 0.28 +0.1
101,389 - GFF2516 0.28 -0.2
101,389 - GFF2516 0.28 -0.2
101,389 - GFF2516 0.28 +0.0
101,389 - GFF2516 0.28 +0.6
101,389 - GFF2516 0.28 +1.5
101,583 + GFF2516 0.57 -0.6
101,583 + GFF2516 0.57 +0.2
101,583 + GFF2516 0.57 -0.2
101,583 + GFF2516 0.57 +0.1
101,584 - GFF2516 0.58 +0.2
101,584 - GFF2516 0.58 +0.2
101,584 - GFF2516 0.58 +0.0
101,584 - GFF2516 0.58 +0.1
101,584 - GFF2516 0.58 -0.8
101,584 - GFF2516 0.58 -0.3
101,584 - GFF2516 0.58 -0.2
101,584 - GFF2516 0.58 +0.0
101,584 - GFF2516 0.58 -0.0
101,584 - GFF2516 0.58 -0.3
101,584 - GFF2516 0.58 +0.5
101,584 - GFF2516 0.58 -0.3
101,584 - GFF2516 0.58 +0.0
101,685 + GFF2516 0.73 -0.1
101,715 + GFF2516 0.77 +0.6
101,715 + GFF2516 0.77 -0.0
101,715 + GFF2516 0.77 -0.8
101,715 + GFF2516 0.77 +0.0
101,716 - GFF2516 0.77 -0.1
101,716 - GFF2516 0.77 +1.0
101,912 + GFF2517 0.70 -0.8
101,912 + GFF2517 0.70 -0.2
101,912 + GFF2517 0.70 -0.7
101,912 + GFF2517 0.70 +0.3
101,912 + GFF2517 0.70 +0.2
101,912 + GFF2517 0.70 -0.5
101,912 + GFF2517 0.70 +0.1
101,912 + GFF2517 0.70 +0.0
101,912 + GFF2517 0.70 -0.0
101,913 - GFF2517 0.71 -0.2
101,913 - GFF2517 0.71 +0.2
101,913 - GFF2517 0.71 -0.1
101,913 - GFF2517 0.71 +0.3

Or see this region's nucleotide sequence