Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2509 and GFF2510 are separated by 189 nucleotides GFF2510 and GFF2511 are separated by 63 nucleotides GFF2511 and GFF2512 are separated by 57 nucleotides
GFF2509 - CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily, at 95,252 to 96,118
GFF2509
GFF2510 - Type IV pilin PilA, at 96,308 to 96,850
GFF2510
GFF2511 - Molybdenum cofactor biosynthesis protein MoaC, at 96,914 to 97,408
GFF2511
GFF2512 - Exported zinc metalloprotease YfgC precursor, at 97,466 to 99,157
GFF2512
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 96.223 kb on + strand at 96.223 kb on + strand at 96.224 kb on - strand at 96.224 kb on - strand at 96.224 kb on - strand at 96.224 kb on - strand at 96.262 kb on + strand at 96.262 kb on + strand at 96.262 kb on + strand at 96.263 kb on - strand at 96.276 kb on + strand at 96.379 kb on + strand, within GFF2510 at 96.379 kb on + strand, within GFF2510 at 96.407 kb on + strand, within GFF2510 at 96.407 kb on + strand, within GFF2510 at 96.408 kb on - strand, within GFF2510 at 96.408 kb on - strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.658 kb on + strand, within GFF2510 at 96.658 kb on + strand, within GFF2510 at 96.659 kb on - strand, within GFF2510 at 96.725 kb on + strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.827 kb on + strand at 96.827 kb on + strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.848 kb on + strand at 96.848 kb on + strand at 96.848 kb on + strand at 96.849 kb on - strand at 96.860 kb on + strand at 96.860 kb on + strand at 96.861 kb on - strand at 97.011 kb on + strand, within GFF2511 at 97.011 kb on + strand, within GFF2511 at 97.011 kb on + strand, within GFF2511 at 97.012 kb on - strand, within GFF2511 at 97.012 kb on - strand, within GFF2511 at 97.399 kb on + strand at 97.400 kb on - strand at 97.430 kb on + strand at 97.430 kb on + strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.459 kb on + strand at 97.459 kb on + strand at 97.459 kb on + strand at 97.459 kb on + strand at 97.460 kb on - strand at 97.460 kb on - strand at 97.685 kb on + strand, within GFF2512 at 97.685 kb on + strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.700 kb on + strand, within GFF2512 at 97.727 kb on + strand, within GFF2512 at 98.114 kb on - strand, within GFF2512 at 98.256 kb on - strand, within GFF2512 at 98.256 kb on - strand, within GFF2512
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 95,981 + GFF2509 0.84 -1.5 95,981 + GFF2509 0.84 -0.4 95,981 + GFF2509 0.84 -0.2 95,981 + GFF2509 0.84 -0.5 95,981 + GFF2509 0.84 -1.6 95,981 + GFF2509 0.84 -0.3 95,981 + GFF2509 0.84 -0.5 95,982 - GFF2509 0.84 -1.2 95,982 - GFF2509 0.84 +0.0 95,982 - GFF2509 0.84 -2.1 95,982 - GFF2509 0.84 +0.1 95,982 - GFF2509 0.84 +0.6 95,982 - GFF2509 0.84 -1.3 95,982 - GFF2509 0.84 +0.3 95,982 - GFF2509 0.84 +0.9 95,982 - GFF2509 0.84 +0.2 96,223 + -0.7 96,223 + -0.1 96,224 - -0.4 96,224 - -0.2 96,224 - -1.3 96,224 - -0.4 96,262 + +0.0 96,262 + -0.5 96,262 + -0.0 96,263 - +0.0 96,276 + +0.7 96,379 + GFF2510 0.13 -1.4 96,379 + GFF2510 0.13 -0.4 96,407 + GFF2510 0.18 -0.7 96,407 + GFF2510 0.18 -0.6 96,408 - GFF2510 0.18 +0.0 96,408 - GFF2510 0.18 +0.2 96,416 + GFF2510 0.20 -1.0 96,416 + GFF2510 0.20 +0.4 96,416 + GFF2510 0.20 -1.8 96,416 + GFF2510 0.20 -0.8 96,417 - GFF2510 0.20 -1.7 96,417 - GFF2510 0.20 -1.1 96,417 - GFF2510 0.20 -1.2 96,417 - GFF2510 0.20 -0.1 96,417 - GFF2510 0.20 -0.6 96,417 - GFF2510 0.20 -0.5 96,417 - GFF2510 0.20 +0.1 96,417 - GFF2510 0.20 -0.2 96,417 - GFF2510 0.20 +0.1 96,417 - GFF2510 0.20 -0.5 96,658 + GFF2510 0.64 +1.7 96,658 + GFF2510 0.64 -0.4 96,659 - GFF2510 0.65 -0.1 96,725 + GFF2510 0.77 -0.5 96,726 - GFF2510 0.77 +0.4 96,726 - GFF2510 0.77 -0.1 96,726 - GFF2510 0.77 +1.1 96,726 - GFF2510 0.77 -0.6 96,726 - GFF2510 0.77 -0.4 96,827 + +0.1 96,827 + +0.1 96,828 - +0.8 96,828 - -0.1 96,828 - +1.8 96,828 - -0.3 96,828 - -0.0 96,828 - -0.0 96,828 - +0.1 96,828 - +0.2 96,828 - +0.1 96,828 - +0.0 96,848 + -0.3 96,848 + -0.0 96,848 + +0.7 96,849 - -0.2 96,860 + -0.4 96,860 + +0.2 96,861 - +0.3 97,011 + GFF2511 0.20 -0.8 97,011 + GFF2511 0.20 -1.0 97,011 + GFF2511 0.20 -2.0 97,012 - GFF2511 0.20 -0.4 97,012 - GFF2511 0.20 -1.5 97,399 + -1.5 97,400 - -1.3 97,430 + +1.3 97,430 + -2.0 97,431 - +0.4 97,431 - -0.1 97,431 - -0.0 97,431 - -2.0 97,459 + -0.5 97,459 + -0.5 97,459 + -2.0 97,459 + -0.3 97,460 - +0.3 97,460 - -0.3 97,685 + GFF2512 0.13 -1.7 97,685 + GFF2512 0.13 -2.3 97,686 - GFF2512 0.13 -0.3 97,686 - GFF2512 0.13 +0.9 97,686 - GFF2512 0.13 -3.1 97,686 - GFF2512 0.13 -3.7 97,700 + GFF2512 0.14 -2.4 97,727 + GFF2512 0.15 -0.3 98,114 - GFF2512 0.38 -2.1 98,256 - GFF2512 0.47 -2.0 98,256 - GFF2512 0.47 -1.1
Or see this region's nucleotide sequence