Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2400 and GFF2401 are separated by 303 nucleotides GFF2401 and GFF2402 are separated by 432 nucleotides
GFF2400 - Chromosome initiation inhibitor, at 45,582 to 46,505
GFF2400
GFF2401 - Mobile element protein, at 46,809 to 47,312
GFF2401
GFF2402 - Transcriptional regulator, LysR family, at 47,745 to 48,638
GFF2402
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 46.445 kb on - strand at 46.483 kb on + strand at 46.484 kb on - strand at 46.623 kb on + strand at 46.668 kb on + strand at 46.668 kb on + strand at 46.668 kb on + strand at 46.669 kb on - strand at 46.679 kb on - strand at 46.682 kb on - strand at 46.765 kb on - strand at 46.765 kb on - strand at 46.900 kb on + strand, within GFF2401 at 46.900 kb on + strand, within GFF2401 at 46.901 kb on - strand, within GFF2401 at 46.957 kb on + strand, within GFF2401 at 46.957 kb on + strand, within GFF2401 at 46.958 kb on - strand, within GFF2401 at 47.060 kb on + strand, within GFF2401 at 47.061 kb on - strand, within GFF2401 at 47.061 kb on - strand, within GFF2401 at 47.248 kb on + strand, within GFF2401 at 47.248 kb on + strand, within GFF2401 at 47.249 kb on - strand, within GFF2401 at 47.249 kb on - strand, within GFF2401 at 47.612 kb on + strand at 47.613 kb on - strand at 47.613 kb on - strand at 47.746 kb on + strand at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.836 kb on + strand, within GFF2402 at 47.837 kb on - strand, within GFF2402 at 47.837 kb on - strand, within GFF2402 at 47.837 kb on - strand, within GFF2402 at 48.034 kb on + strand, within GFF2402 at 48.035 kb on - strand, within GFF2402 at 48.035 kb on - strand, within GFF2402 at 48.035 kb on - strand, within GFF2402 at 48.159 kb on - strand, within GFF2402 at 48.160 kb on + strand, within GFF2402 at 48.160 kb on + strand, within GFF2402 at 48.161 kb on - strand, within GFF2402
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 46,445 - -0.0 46,483 + -0.2 46,484 - -0.2 46,623 + +0.3 46,668 + -0.8 46,668 + +0.3 46,668 + +0.8 46,669 - -0.2 46,679 - -0.5 46,682 - +0.2 46,765 - +0.2 46,765 - -0.4 46,900 + GFF2401 0.18 -1.0 46,900 + GFF2401 0.18 -1.2 46,901 - GFF2401 0.18 -0.1 46,957 + GFF2401 0.29 -0.5 46,957 + GFF2401 0.29 -2.8 46,958 - GFF2401 0.30 -0.3 47,060 + GFF2401 0.50 -0.9 47,061 - GFF2401 0.50 -0.0 47,061 - GFF2401 0.50 +0.1 47,248 + GFF2401 0.87 +0.2 47,248 + GFF2401 0.87 +0.2 47,249 - GFF2401 0.87 -0.1 47,249 - GFF2401 0.87 +0.0 47,612 + -0.6 47,613 - +0.1 47,613 - -0.2 47,746 + +0.3 47,836 + GFF2402 0.10 +0.0 47,836 + GFF2402 0.10 -0.2 47,836 + GFF2402 0.10 -0.4 47,836 + GFF2402 0.10 -0.9 47,836 + GFF2402 0.10 +0.0 47,836 + GFF2402 0.10 +0.7 47,837 - GFF2402 0.10 +0.3 47,837 - GFF2402 0.10 -0.0 47,837 - GFF2402 0.10 +0.1 48,034 + GFF2402 0.32 -0.3 48,035 - GFF2402 0.32 +0.1 48,035 - GFF2402 0.32 -0.2 48,035 - GFF2402 0.32 -0.2 48,159 - GFF2402 0.46 +0.9 48,160 + GFF2402 0.46 +0.1 48,160 + GFF2402 0.46 -0.8 48,161 - GFF2402 0.47 +0.1
Or see this region's nucleotide sequence