Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2306 and GFF2307 are separated by 1 nucleotides GFF2307 and GFF2308 are separated by 62 nucleotides GFF2308 and GFF2309 are separated by 91 nucleotides GFF2309 and GFF2310 overlap by 14 nucleotides
GFF2306 - Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2), at 1,189,952 to 1,190,563
GFF2306
GFF2307 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 1,190,565 to 1,191,296
GFF2307
GFF2308 - multi-sensor hybrid histidine kinase, at 1,191,359 to 1,193,431
GFF2308
GFF2309 - hypothetical protein, at 1,193,523 to 1,193,864
GFF2309
GFF2310 - putative exported protein, at 1,193,851 to 1,194,843
GFF2310
Position (kb) 1191
1192
1193
1194 Strain fitness (log2 ratio) -1
0
1
2 at 1190.513 kb on + strand at 1190.699 kb on - strand, within GFF2307 at 1190.878 kb on + strand, within GFF2307 at 1190.920 kb on - strand, within GFF2307 at 1190.920 kb on - strand, within GFF2307 at 1190.920 kb on - strand, within GFF2307 at 1190.920 kb on - strand, within GFF2307 at 1190.927 kb on - strand, within GFF2307 at 1190.989 kb on + strand, within GFF2307 at 1190.989 kb on + strand, within GFF2307 at 1190.989 kb on + strand, within GFF2307 at 1190.990 kb on - strand, within GFF2307 at 1190.990 kb on - strand, within GFF2307 at 1191.223 kb on + strand at 1191.224 kb on - strand at 1191.224 kb on - strand at 1191.332 kb on + strand at 1191.333 kb on - strand at 1192.241 kb on + strand, within GFF2308 at 1192.241 kb on + strand, within GFF2308 at 1192.242 kb on - strand, within GFF2308 at 1192.242 kb on - strand, within GFF2308 at 1192.242 kb on - strand, within GFF2308 at 1192.242 kb on - strand, within GFF2308 at 1192.799 kb on + strand, within GFF2308 at 1192.800 kb on - strand, within GFF2308 at 1193.000 kb on + strand, within GFF2308 at 1193.001 kb on - strand, within GFF2308 at 1193.001 kb on - strand, within GFF2308 at 1193.318 kb on + strand at 1193.754 kb on + strand, within GFF2309 at 1193.754 kb on + strand, within GFF2309 at 1193.754 kb on + strand, within GFF2309 at 1193.754 kb on + strand, within GFF2309 at 1193.754 kb on + strand, within GFF2309 at 1193.755 kb on - strand, within GFF2309 at 1193.793 kb on + strand, within GFF2309 at 1193.793 kb on + strand, within GFF2309 at 1193.794 kb on - strand, within GFF2309 at 1193.794 kb on - strand, within GFF2309 at 1193.794 kb on - strand, within GFF2309 at 1194.221 kb on + strand, within GFF2310 at 1194.221 kb on + strand, within GFF2310 at 1194.222 kb on - strand, within GFF2310 at 1194.275 kb on + strand, within GFF2310 at 1194.276 kb on - strand, within GFF2310 at 1194.276 kb on - strand, within GFF2310 at 1194.276 kb on - strand, within GFF2310 at 1194.276 kb on - strand, within GFF2310 at 1194.276 kb on - strand, within GFF2310
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 1,190,513 + +0.1 1,190,699 - GFF2307 0.18 +0.3 1,190,878 + GFF2307 0.43 -1.2 1,190,920 - GFF2307 0.48 -0.4 1,190,920 - GFF2307 0.48 -1.2 1,190,920 - GFF2307 0.48 +0.5 1,190,920 - GFF2307 0.48 +0.1 1,190,927 - GFF2307 0.49 +1.0 1,190,989 + GFF2307 0.58 -0.1 1,190,989 + GFF2307 0.58 +0.0 1,190,989 + GFF2307 0.58 -1.6 1,190,990 - GFF2307 0.58 +1.5 1,190,990 - GFF2307 0.58 -0.5 1,191,223 + -1.5 1,191,224 - +0.0 1,191,224 - +0.7 1,191,332 + -0.1 1,191,333 - -0.8 1,192,241 + GFF2308 0.43 -0.5 1,192,241 + GFF2308 0.43 +1.0 1,192,242 - GFF2308 0.43 +0.0 1,192,242 - GFF2308 0.43 -0.3 1,192,242 - GFF2308 0.43 -1.3 1,192,242 - GFF2308 0.43 +1.2 1,192,799 + GFF2308 0.69 -1.7 1,192,800 - GFF2308 0.70 -0.5 1,193,000 + GFF2308 0.79 -1.0 1,193,001 - GFF2308 0.79 +1.8 1,193,001 - GFF2308 0.79 -0.7 1,193,318 + -1.6 1,193,754 + GFF2309 0.68 +0.2 1,193,754 + GFF2309 0.68 -0.1 1,193,754 + GFF2309 0.68 -0.1 1,193,754 + GFF2309 0.68 -1.1 1,193,754 + GFF2309 0.68 -0.4 1,193,755 - GFF2309 0.68 -0.9 1,193,793 + GFF2309 0.79 +0.3 1,193,793 + GFF2309 0.79 +0.9 1,193,794 - GFF2309 0.79 +0.7 1,193,794 - GFF2309 0.79 -0.1 1,193,794 - GFF2309 0.79 +0.1 1,194,221 + GFF2310 0.37 -0.8 1,194,221 + GFF2310 0.37 +0.0 1,194,222 - GFF2310 0.37 +0.0 1,194,275 + GFF2310 0.43 -1.6 1,194,276 - GFF2310 0.43 -0.1 1,194,276 - GFF2310 0.43 -0.5 1,194,276 - GFF2310 0.43 +0.4 1,194,276 - GFF2310 0.43 -0.4 1,194,276 - GFF2310 0.43 +0.4
Or see this region's nucleotide sequence