Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2253

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,136,419	+		GFF2252	0.45	+0.0
1,136,525	-		GFF2252	0.55	-0.8
1,136,525	-		GFF2252	0.55	-0.5
1,136,525	-		GFF2252	0.55	+0.1
1,136,573	-		GFF2252	0.60	-0.2
1,136,573	-		GFF2252	0.60	-1.1
1,136,591	-		GFF2252	0.61	+0.1
1,136,602	+		GFF2252	0.62	-1.3
1,136,602	+		GFF2252	0.62	+0.5
1,136,603	-		GFF2252	0.62	+0.4
1,136,603	-		GFF2252	0.62	-0.8
1,137,176	+		GFF2253	0.23	+1.2
1,137,332	+		GFF2253	0.42	+0.3
1,137,332	+		GFF2253	0.42	+0.0
1,137,953	+		GFF2254	0.12	-0.3
1,137,954	-		GFF2254	0.12	+0.1
1,137,956	+		GFF2254	0.13	-1.2
1,137,956	+		GFF2254	0.13	-0.6
1,138,274	+		GFF2254	0.43	+0.0
1,138,442	+		GFF2254	0.58	-0.1
1,138,442	+		GFF2254	0.58	-1.6