Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF209 and GFF210 are separated by 15 nucleotides GFF210 and GFF211 are separated by 90 nucleotides
GFF209 - Hypothetical protein with Rieske (2Fe-2S) region, at 226,739 to 227,761
GFF209
GFF210 - Adenosine deaminase (EC 3.5.4.4), at 227,777 to 228,784
GFF210
GFF211 - Fic family protein, at 228,875 to 230,014
GFF211
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1 at 226.961 kb on + strand, within GFF209 at 226.962 kb on - strand, within GFF209 at 227.379 kb on - strand, within GFF209 at 227.418 kb on - strand, within GFF209 at 227.897 kb on + strand, within GFF210 at 227.898 kb on - strand, within GFF210 at 227.898 kb on - strand, within GFF210 at 227.898 kb on - strand, within GFF210 at 227.928 kb on - strand, within GFF210 at 227.928 kb on - strand, within GFF210 at 227.963 kb on + strand, within GFF210 at 227.963 kb on + strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 227.964 kb on - strand, within GFF210 at 228.024 kb on - strand, within GFF210 at 228.024 kb on - strand, within GFF210 at 228.389 kb on + strand, within GFF210 at 228.618 kb on - strand, within GFF210 at 228.629 kb on + strand, within GFF210 at 228.804 kb on - strand at 228.804 kb on - strand at 228.896 kb on + strand at 228.896 kb on + strand at 228.897 kb on - strand at 228.910 kb on + strand at 228.910 kb on + strand at 228.910 kb on + strand at 228.910 kb on + strand at 228.910 kb on + strand at 228.944 kb on + strand at 228.944 kb on + strand at 228.944 kb on + strand at 228.944 kb on + strand at 228.945 kb on - strand at 228.945 kb on - strand at 228.945 kb on - strand at 229.604 kb on + strand, within GFF211 at 229.604 kb on + strand, within GFF211 at 229.604 kb on + strand, within GFF211 at 229.605 kb on - strand, within GFF211 at 229.605 kb on - strand, within GFF211 at 229.605 kb on - strand, within GFF211 at 229.605 kb on - strand, within GFF211 at 229.643 kb on + strand, within GFF211 at 229.643 kb on + strand, within GFF211 at 229.643 kb on + strand, within GFF211 at 229.643 kb on + strand, within GFF211 at 229.644 kb on - strand, within GFF211 at 229.646 kb on + strand, within GFF211 at 229.646 kb on + strand, within GFF211 at 229.646 kb on + strand, within GFF211 at 229.646 kb on + strand, within GFF211 at 229.647 kb on - strand, within GFF211 at 229.647 kb on - strand, within GFF211 at 229.647 kb on - strand, within GFF211
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 226,961 + GFF209 0.22 +0.5 226,962 - GFF209 0.22 +0.3 227,379 - GFF209 0.63 +0.8 227,418 - GFF209 0.66 +0.5 227,897 + GFF210 0.12 +0.6 227,898 - GFF210 0.12 +0.3 227,898 - GFF210 0.12 +0.7 227,898 - GFF210 0.12 +0.8 227,928 - GFF210 0.15 +1.2 227,928 - GFF210 0.15 +0.7 227,963 + GFF210 0.18 +0.9 227,963 + GFF210 0.18 +0.4 227,964 - GFF210 0.19 +0.7 227,964 - GFF210 0.19 +1.0 227,964 - GFF210 0.19 +0.1 227,964 - GFF210 0.19 +1.0 227,964 - GFF210 0.19 +0.9 227,964 - GFF210 0.19 +0.7 227,964 - GFF210 0.19 +1.3 228,024 - GFF210 0.25 -0.2 228,024 - GFF210 0.25 +0.1 228,389 + GFF210 0.61 +0.7 228,618 - GFF210 0.83 -0.8 228,629 + GFF210 0.85 -0.4 228,804 - -0.0 228,804 - +0.4 228,896 + +0.5 228,896 + -0.3 228,897 - +0.5 228,910 + -0.1 228,910 + -0.0 228,910 + +0.3 228,910 + -0.1 228,910 + +0.6 228,944 + -0.1 228,944 + +0.3 228,944 + -1.7 228,944 + -0.4 228,945 - -0.8 228,945 - -0.3 228,945 - -0.5 229,604 + GFF211 0.64 +0.2 229,604 + GFF211 0.64 +0.4 229,604 + GFF211 0.64 -0.2 229,605 - GFF211 0.64 -0.7 229,605 - GFF211 0.64 +0.0 229,605 - GFF211 0.64 -0.3 229,605 - GFF211 0.64 -0.7 229,643 + GFF211 0.67 +0.5 229,643 + GFF211 0.67 +0.0 229,643 + GFF211 0.67 +0.9 229,643 + GFF211 0.67 +0.1 229,644 - GFF211 0.67 -0.5 229,646 + GFF211 0.68 +0.1 229,646 + GFF211 0.68 -0.8 229,646 + GFF211 0.68 +0.8 229,646 + GFF211 0.68 +0.3 229,647 - GFF211 0.68 +0.0 229,647 - GFF211 0.68 -0.4 229,647 - GFF211 0.68 -0.2
Or see this region's nucleotide sequence