Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2025

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2024 and GFF2025 are separated by 162 nucleotidesGFF2025 and GFF2026 are separated by 309 nucleotides GFF2024 - hypothetical protein, at 902,308 to 903,954 GFF2024 GFF2025 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 904,117 to 904,887 GFF2025 GFF2026 - hypothetical protein, at 905,197 to 905,433 GFF2026 Position (kb) 904 905Strain fitness (log2 ratio) -2 -1 0 1 2at 903.125 kb on + strand, within GFF2024at 903.130 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.273 kb on + strand, within GFF2024at 903.274 kb on - strand, within GFF2024at 903.274 kb on - strand, within GFF2024at 903.274 kb on - strand, within GFF2024at 903.274 kb on - strand, within GFF2024at 903.274 kb on - strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.275 kb on + strand, within GFF2024at 903.276 kb on - strand, within GFF2024at 903.276 kb on - strand, within GFF2024at 903.276 kb on - strand, within GFF2024at 903.304 kb on + strand, within GFF2024at 903.305 kb on - strand, within GFF2024at 903.305 kb on - strand, within GFF2024at 903.427 kb on - strand, within GFF2024at 903.479 kb on + strand, within GFF2024at 903.480 kb on - strand, within GFF2024at 903.480 kb on - strand, within GFF2024at 903.507 kb on + strand, within GFF2024at 903.580 kb on + strand, within GFF2024at 903.606 kb on - strand, within GFF2024at 903.606 kb on - strand, within GFF2024at 903.660 kb on - strand, within GFF2024at 903.867 kb on + strandat 903.936 kb on + strandat 904.018 kb on + strandat 904.018 kb on + strandat 904.018 kb on + strandat 904.018 kb on + strandat 904.018 kb on + strandat 904.018 kb on + strandat 904.019 kb on - strandat 904.019 kb on - strandat 904.019 kb on - strandat 904.085 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.087 kb on + strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.088 kb on - strandat 904.207 kb on + strand, within GFF2025at 904.207 kb on + strand, within GFF2025at 904.208 kb on - strand, within GFF2025at 904.297 kb on + strand, within GFF2025at 904.297 kb on + strand, within GFF2025at 904.297 kb on + strand, within GFF2025at 904.298 kb on - strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.549 kb on + strand, within GFF2025at 904.549 kb on + strand, within GFF2025at 904.549 kb on + strand, within GFF2025at 904.550 kb on - strand, within GFF2025at 904.559 kb on - strand, within GFF2025at 904.624 kb on + strand, within GFF2025at 904.624 kb on + strand, within GFF2025at 904.624 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.694 kb on + strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.876 kb on + strandat 904.876 kb on + strandat 904.894 kb on + strandat 904.894 kb on + strandat 904.895 kb on - strandat 904.895 kb on - strandat 904.895 kb on - strandat 904.895 kb on - strandat 904.939 kb on - strandat 904.967 kb on - strandat 904.967 kb on - strandat 905.300 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.345 kb on + strand, within GFF2026at 905.345 kb on + strand, within GFF2026at 905.531 kb on + strandat 905.532 kb on - strandat 905.725 kb on + strandat 905.725 kb on + strandat 905.726 kb on - strandat 905.726 kb on - strandat 905.805 kb on + strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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903,125 + GFF2024 0.50 +0.3
903,130 + GFF2024 0.50 -1.1
903,273 + GFF2024 0.59 -0.4
903,273 + GFF2024 0.59 -0.6
903,273 + GFF2024 0.59 -0.1
903,273 + GFF2024 0.59 +0.2
903,273 + GFF2024 0.59 +1.0
903,273 + GFF2024 0.59 -0.7
903,273 + GFF2024 0.59 -0.1
903,273 + GFF2024 0.59 -1.0
903,274 - GFF2024 0.59 -0.5
903,274 - GFF2024 0.59 -2.5
903,274 - GFF2024 0.59 +0.2
903,274 - GFF2024 0.59 -0.3
903,274 - GFF2024 0.59 -0.2
903,275 + GFF2024 0.59 -0.5
903,275 + GFF2024 0.59 -0.1
903,275 + GFF2024 0.59 +0.1
903,275 + GFF2024 0.59 +0.3
903,275 + GFF2024 0.59 -0.8
903,275 + GFF2024 0.59 -0.7
903,275 + GFF2024 0.59 -0.2
903,276 - GFF2024 0.59 +0.7
903,276 - GFF2024 0.59 +0.5
903,276 - GFF2024 0.59 -1.1
903,304 + GFF2024 0.60 +0.0
903,305 - GFF2024 0.61 +0.5
903,305 - GFF2024 0.61 +0.4
903,427 - GFF2024 0.68 -0.4
903,479 + GFF2024 0.71 -0.9
903,480 - GFF2024 0.71 -0.8
903,480 - GFF2024 0.71 -0.0
903,507 + GFF2024 0.73 +1.0
903,580 + GFF2024 0.77 -0.5
903,606 - GFF2024 0.79 -0.7
903,606 - GFF2024 0.79 -0.8
903,660 - GFF2024 0.82 -0.0
903,867 + -1.4
903,936 + +1.0
904,018 + +0.3
904,018 + +0.6
904,018 + -0.2
904,018 + -0.0
904,018 + -0.7
904,018 + +1.1
904,019 - -0.3
904,019 - +0.9
904,019 - +0.8
904,085 + +1.3
904,087 + -0.0
904,087 + -0.1
904,087 + -0.5
904,087 + +0.5
904,087 + -0.4
904,087 + +0.7
904,087 + -0.3
904,087 + +0.5
904,087 + +0.0
904,087 + -0.2
904,087 + +0.0
904,087 + -0.3
904,087 + +1.2
904,087 + -0.4
904,087 + -0.1
904,087 + -0.7
904,087 + -0.5
904,087 + -0.6
904,088 - +0.1
904,088 - +0.8
904,088 - +0.1
904,088 - -0.1
904,088 - -0.8
904,088 - -0.2
904,088 - +0.2
904,088 - +0.6
904,088 - -0.1
904,088 - +0.5
904,088 - +1.0
904,088 - +0.1
904,207 + GFF2025 0.12 +0.6
904,207 + GFF2025 0.12 -0.2
904,208 - GFF2025 0.12 +0.3
904,297 + GFF2025 0.23 -1.0
904,297 + GFF2025 0.23 -1.8
904,297 + GFF2025 0.23 +0.7
904,298 - GFF2025 0.23 -0.1
904,451 + GFF2025 0.43 -0.1
904,451 + GFF2025 0.43 -0.4
904,451 + GFF2025 0.43 -0.3
904,451 + GFF2025 0.43 +0.5
904,451 + GFF2025 0.43 -0.2
904,451 + GFF2025 0.43 -0.3
904,451 + GFF2025 0.43 -0.9
904,451 + GFF2025 0.43 -0.0
904,451 + GFF2025 0.43 -0.1
904,451 + GFF2025 0.43 -0.3
904,452 - GFF2025 0.43 -1.7
904,452 - GFF2025 0.43 -0.2
904,452 - GFF2025 0.43 -0.5
904,452 - GFF2025 0.43 -0.8
904,452 - GFF2025 0.43 +0.5
904,452 - GFF2025 0.43 +0.1
904,452 - GFF2025 0.43 +0.8
904,452 - GFF2025 0.43 +0.3
904,452 - GFF2025 0.43 -0.9
904,549 + GFF2025 0.56 -0.6
904,549 + GFF2025 0.56 +1.0
904,549 + GFF2025 0.56 +0.2
904,550 - GFF2025 0.56 +0.5
904,559 - GFF2025 0.57 +0.5
904,624 + GFF2025 0.66 -0.1
904,624 + GFF2025 0.66 +0.3
904,624 + GFF2025 0.66 +0.2
904,693 + GFF2025 0.75 -0.3
904,693 + GFF2025 0.75 -0.4
904,693 + GFF2025 0.75 +0.0
904,693 + GFF2025 0.75 +2.0
904,693 + GFF2025 0.75 +0.6
904,693 + GFF2025 0.75 +0.3
904,693 + GFF2025 0.75 -2.1
904,693 + GFF2025 0.75 -1.2
904,693 + GFF2025 0.75 -0.9
904,693 + GFF2025 0.75 -1.5
904,693 + GFF2025 0.75 -0.2
904,693 + GFF2025 0.75 -1.0
904,693 + GFF2025 0.75 +0.3
904,693 + GFF2025 0.75 +0.3
904,693 + GFF2025 0.75 +0.5
904,693 + GFF2025 0.75 +0.7
904,693 + GFF2025 0.75 +0.1
904,693 + GFF2025 0.75 +0.4
904,693 + GFF2025 0.75 -1.1
904,693 + GFF2025 0.75 -0.4
904,694 + GFF2025 0.75 -0.1
904,694 - GFF2025 0.75 +0.1
904,694 - GFF2025 0.75 -0.5
904,694 - GFF2025 0.75 -0.6
904,694 - GFF2025 0.75 -1.7
904,694 - GFF2025 0.75 -1.1
904,694 - GFF2025 0.75 -0.5
904,694 - GFF2025 0.75 +0.1
904,694 - GFF2025 0.75 -0.3
904,694 - GFF2025 0.75 +0.1
904,694 - GFF2025 0.75 +0.5
904,694 - GFF2025 0.75 -1.8
904,694 - GFF2025 0.75 -0.4
904,694 - GFF2025 0.75 -0.7
904,876 + -0.1
904,876 + +0.1
904,894 + +0.3
904,894 + +0.5
904,895 - +0.3
904,895 - -0.2
904,895 - +0.8
904,895 - -1.6
904,939 - +1.1
904,967 - +1.2
904,967 - +0.6
905,300 + GFF2026 0.43 -0.0
905,305 + GFF2026 0.46 -0.1
905,305 + GFF2026 0.46 -0.5
905,305 + GFF2026 0.46 +0.2
905,305 + GFF2026 0.46 -0.3
905,305 + GFF2026 0.46 +0.0
905,306 - GFF2026 0.46 +0.3
905,306 - GFF2026 0.46 -0.2
905,306 - GFF2026 0.46 +0.4
905,306 - GFF2026 0.46 +0.3
905,306 - GFF2026 0.46 -0.9
905,345 + GFF2026 0.62 +0.3
905,345 + GFF2026 0.62 +0.4
905,531 + +0.2
905,532 - +0.5
905,725 + -0.9
905,725 + +1.5
905,726 - -0.1
905,726 - -0.2
905,805 + +0.1
905,806 - -0.4
905,806 - -0.4
905,806 - -0.0
905,806 - -0.1

Or see this region's nucleotide sequence