Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1998

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1996 and GFF1997 are separated by 29 nucleotidesGFF1997 and GFF1998 are separated by 101 nucleotidesGFF1998 and GFF1999 are separated by 10 nucleotidesGFF1999 and GFF2000 are separated by 209 nucleotides GFF1996 - Alkanesulfonates transport system permease protein, at 872,867 to 873,640 GFF1996 GFF1997 - Cyclase, at 873,670 to 874,476 GFF1997 GFF1998 - Fumarylacetoacetase (EC 3.7.1.2), at 874,578 to 875,900 GFF1998 GFF1999 - Membrane protein TerC, possibly involved in tellurium resistance, at 875,911 to 876,606 GFF1999 GFF2000 - Uracil permease, at 876,816 to 878,117 GFF2000 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1at 873.700 kb on + strandat 873.700 kb on + strandat 873.700 kb on + strandat 873.700 kb on + strandat 873.700 kb on + strandat 873.700 kb on + strandat 873.701 kb on - strandat 873.701 kb on - strandat 873.701 kb on - strandat 873.895 kb on + strand, within GFF1997at 873.895 kb on + strand, within GFF1997at 874.024 kb on + strand, within GFF1997at 874.025 kb on - strand, within GFF1997at 874.168 kb on + strand, within GFF1997at 874.169 kb on - strand, within GFF1997at 874.169 kb on - strand, within GFF1997at 874.169 kb on - strand, within GFF1997at 874.183 kb on + strand, within GFF1997at 874.183 kb on + strand, within GFF1997at 874.183 kb on + strand, within GFF1997at 874.184 kb on - strand, within GFF1997at 874.184 kb on - strand, within GFF1997at 874.184 kb on - strand, within GFF1997at 874.184 kb on - strand, within GFF1997at 874.264 kb on + strand, within GFF1997at 874.475 kb on - strandat 874.475 kb on - strandat 874.986 kb on + strand, within GFF1998at 874.986 kb on + strand, within GFF1998at 874.986 kb on + strand, within GFF1998at 874.987 kb on - strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.999 kb on - strand, within GFF1998at 874.999 kb on - strand, within GFF1998at 874.999 kb on - strand, within GFF1998at 875.088 kb on + strand, within GFF1998at 875.088 kb on + strand, within GFF1998at 875.181 kb on + strand, within GFF1998at 875.181 kb on + strand, within GFF1998at 875.181 kb on + strand, within GFF1998at 875.182 kb on - strand, within GFF1998at 875.205 kb on + strand, within GFF1998at 875.205 kb on + strand, within GFF1998at 875.206 kb on - strand, within GFF1998at 875.206 kb on - strand, within GFF1998at 875.226 kb on + strand, within GFF1998at 875.226 kb on + strand, within GFF1998at 875.226 kb on + strand, within GFF1998at 875.227 kb on - strand, within GFF1998at 875.475 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.608 kb on - strand, within GFF1998at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.348 kb on - strand, within GFF1999at 876.348 kb on - strand, within GFF1999at 876.629 kb on + strandat 876.647 kb on + strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.687 kb on - strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.716 kb on - strandat 876.716 kb on - strandat 876.724 kb on + strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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873,700 + -0.1
873,700 + -0.1
873,700 + -0.5
873,700 + -0.5
873,700 + -0.3
873,700 + +1.2
873,701 - +0.2
873,701 - -0.6
873,701 - +0.4
873,895 + GFF1997 0.28 -0.7
873,895 + GFF1997 0.28 +1.4
874,024 + GFF1997 0.44 -0.6
874,025 - GFF1997 0.44 -0.3
874,168 + GFF1997 0.62 +0.9
874,169 - GFF1997 0.62 +0.2
874,169 - GFF1997 0.62 -0.9
874,169 - GFF1997 0.62 +0.2
874,183 + GFF1997 0.64 -0.3
874,183 + GFF1997 0.64 -0.0
874,183 + GFF1997 0.64 +0.3
874,184 - GFF1997 0.64 -0.0
874,184 - GFF1997 0.64 +0.3
874,184 - GFF1997 0.64 +0.0
874,184 - GFF1997 0.64 +0.0
874,264 + GFF1997 0.74 +0.1
874,475 - +1.3
874,475 - -0.9
874,986 + GFF1998 0.31 +0.1
874,986 + GFF1998 0.31 -0.1
874,986 + GFF1998 0.31 -0.0
874,987 - GFF1998 0.31 +1.2
874,998 + GFF1998 0.32 -0.1
874,998 + GFF1998 0.32 -0.2
874,998 + GFF1998 0.32 -0.2
874,998 + GFF1998 0.32 +0.5
874,998 + GFF1998 0.32 +0.1
874,999 - GFF1998 0.32 -0.0
874,999 - GFF1998 0.32 -0.2
874,999 - GFF1998 0.32 +0.1
875,088 + GFF1998 0.39 -0.3
875,088 + GFF1998 0.39 -0.5
875,181 + GFF1998 0.46 +1.2
875,181 + GFF1998 0.46 -0.3
875,181 + GFF1998 0.46 +0.5
875,182 - GFF1998 0.46 +0.4
875,205 + GFF1998 0.47 +0.2
875,205 + GFF1998 0.47 -0.1
875,206 - GFF1998 0.47 +0.3
875,206 - GFF1998 0.47 +0.0
875,226 + GFF1998 0.49 +0.1
875,226 + GFF1998 0.49 -0.2
875,226 + GFF1998 0.49 +0.4
875,227 - GFF1998 0.49 +0.5
875,475 + GFF1998 0.68 +0.2
875,607 + GFF1998 0.78 +0.5
875,607 + GFF1998 0.78 +0.4
875,607 + GFF1998 0.78 -0.1
875,607 + GFF1998 0.78 -0.3
875,608 - GFF1998 0.78 -0.3
876,002 + GFF1999 0.13 -0.7
876,002 + GFF1999 0.13 +0.6
876,002 + GFF1999 0.13 -0.2
876,002 + GFF1999 0.13 -0.4
876,003 - GFF1999 0.13 +1.1
876,003 - GFF1999 0.13 -0.7
876,003 - GFF1999 0.13 +0.3
876,003 - GFF1999 0.13 +0.2
876,003 - GFF1999 0.13 -1.6
876,029 + GFF1999 0.17 -0.1
876,029 + GFF1999 0.17 +0.1
876,029 + GFF1999 0.17 -0.5
876,029 + GFF1999 0.17 +0.4
876,029 + GFF1999 0.17 -1.1
876,029 + GFF1999 0.17 -1.5
876,030 - GFF1999 0.17 +0.3
876,030 - GFF1999 0.17 +0.2
876,030 - GFF1999 0.17 +1.3
876,030 - GFF1999 0.17 +0.7
876,030 - GFF1999 0.17 +0.1
876,030 - GFF1999 0.17 +1.0
876,030 - GFF1999 0.17 -0.1
876,030 - GFF1999 0.17 -0.5
876,348 - GFF1999 0.63 +0.2
876,348 - GFF1999 0.63 -0.3
876,629 + -0.4
876,647 + -0.5
876,648 - -0.4
876,648 - -0.3
876,648 - -0.6
876,648 - +1.0
876,648 - +0.6
876,648 - -0.5
876,648 - +0.1
876,648 - -0.3
876,648 - -1.8
876,687 - -0.3
876,715 + +1.7
876,715 + +0.7
876,715 + -0.3
876,715 + +0.0
876,716 - +0.5
876,716 - +0.0
876,724 + +0.4
876,725 - +0.1
876,725 - +1.6
876,725 - -0.1
876,725 - -0.2
876,725 - +0.4
876,725 - +0.5

Or see this region's nucleotide sequence