Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1951

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
823,580	+		GFF1950	0.24	+0.3
823,580	+		GFF1950	0.24	+0.2
823,581	-		GFF1950	0.24	-0.8
823,581	-		GFF1950	0.24	-3.0
823,581	-		GFF1950	0.24	+0.4
823,581	-		GFF1950	0.24	+0.8
823,581	-		GFF1950	0.24	-0.8
823,581	-		GFF1950	0.24	+0.2
823,581	-		GFF1950	0.24	-0.1
823,958	+		GFF1950	0.89	-0.3
823,958	+		GFF1950	0.89	+1.2
823,958	+		GFF1950	0.89	-0.9
823,958	+		GFF1950	0.89	+0.9
823,959	-		GFF1950	0.89	-0.8
823,959	-		GFF1950	0.89	-1.0
824,113	+				+0.8
824,113	+				+0.0
824,113	+				+1.4
824,113	+				-0.2
824,113	+				+0.2
824,114	-				+0.1
824,114	-				-0.8
824,114	-				+0.3
824,114	-				+0.3
824,114	-				+0.5
824,114	-				-0.4
824,114	-				+0.1
824,114	-				+0.4
824,114	-				+0.3
824,134	+		GFF1951	0.11	+0.5
824,170	+		GFF1951	0.15	+0.2
824,170	+		GFF1951	0.15	-0.7
824,170	+		GFF1951	0.15	+1.4
824,259	+		GFF1951	0.25	+0.7
824,259	+		GFF1951	0.25	-0.1
824,259	+		GFF1951	0.25	+0.4
824,259	+		GFF1951	0.25	-1.2
824,260	-		GFF1951	0.25	-1.0
824,260	-		GFF1951	0.25	-1.5
824,260	-		GFF1951	0.25	-0.0
824,260	-		GFF1951	0.25	+0.1
824,260	-		GFF1951	0.25	+0.1
824,510	+		GFF1951	0.51	-0.4
824,536	+		GFF1951	0.54	+0.6
824,537	-		GFF1951	0.54	+0.2
824,537	-		GFF1951	0.54	+0.3
824,537	-		GFF1951	0.54	+0.3
824,537	-		GFF1951	0.54	-1.3
824,662	+		GFF1951	0.67	+0.1
824,662	+		GFF1951	0.67	+0.3
824,663	-		GFF1951	0.67	-0.6
824,663	-		GFF1951	0.67	+0.2
825,068	+				-0.4
825,068	+				-0.0
825,068	+				-0.3
825,068	+				-1.7
825,068	+				+0.0
825,068	+				-1.0
825,068	+				+1.2
825,068	+				+1.3
825,068	+				-0.6
825,068	+				-0.5
825,068	+				+0.7
825,069	-				+0.2
825,069	-				+1.1
825,069	-				+0.5
825,069	-				-0.0
825,069	-				+0.1
825,069	-				+0.3
825,069	-				-0.9
825,124	+				+0.7
825,124	+				+0.2
825,124	+				+0.6
825,124	+				-0.2
825,124	+				+1.1
825,125	-				-0.6
825,125	-				-0.3
825,125	-				+0.7
825,125	-				-0.7
825,149	+				-1.3
825,149	+				+0.1
825,210	+				+0.0
825,210	+				+0.3
825,210	+				-0.3
825,210	+				-0.9
825,210	-				-0.1
825,211	-				+1.1
825,211	-				-0.8
825,211	-				+0.1
825,211	-				-1.0
825,216	+				+0.1
825,216	+				+0.7
825,217	-				-0.3
825,217	-				+0.2
825,217	-				-0.0
825,217	-				-0.0
825,217	-				-0.2
825,217	-				-0.2