Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1891 and GFF1892 are separated by 345 nucleotides GFF1892 and GFF1893 are separated by 9 nucleotides GFF1893 and GFF1894 are separated by 92 nucleotides
GFF1891 - FIG011065: hypothetical protein, at 754,942 to 755,703
GFF1891
GFF1892 - Ammonium transporter, at 756,049 to 757,344
GFF1892
GFF1893 - hypothetical protein, at 757,354 to 757,659
GFF1893
GFF1894 - Choline dehydrogenase (EC 1.1.99.1), at 757,752 to 759,410
GFF1894
Position (kb) 756
757
758 Strain fitness (log2 ratio) -2
-1
0
1 at 755.198 kb on + strand, within GFF1891 at 755.198 kb on + strand, within GFF1891 at 755.199 kb on - strand, within GFF1891 at 755.264 kb on + strand, within GFF1891 at 755.264 kb on + strand, within GFF1891 at 755.264 kb on + strand, within GFF1891 at 755.264 kb on + strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.265 kb on - strand, within GFF1891 at 755.366 kb on + strand, within GFF1891 at 755.366 kb on + strand, within GFF1891 at 755.367 kb on - strand, within GFF1891 at 755.367 kb on - strand, within GFF1891 at 755.367 kb on - strand, within GFF1891 at 755.367 kb on - strand, within GFF1891 at 755.367 kb on - strand, within GFF1891 at 755.519 kb on + strand, within GFF1891 at 755.519 kb on + strand, within GFF1891 at 755.879 kb on - strand at 755.879 kb on - strand at 755.996 kb on - strand at 756.205 kb on + strand, within GFF1892 at 756.205 kb on + strand, within GFF1892 at 756.205 kb on + strand, within GFF1892 at 756.206 kb on - strand, within GFF1892 at 756.206 kb on - strand, within GFF1892 at 756.301 kb on + strand, within GFF1892 at 756.301 kb on + strand, within GFF1892 at 756.302 kb on - strand, within GFF1892 at 756.565 kb on + strand, within GFF1892 at 756.565 kb on + strand, within GFF1892 at 756.566 kb on - strand, within GFF1892 at 756.566 kb on - strand, within GFF1892 at 756.688 kb on + strand, within GFF1892 at 756.712 kb on + strand, within GFF1892 at 757.219 kb on + strand at 757.220 kb on - strand at 757.220 kb on - strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.640 kb on - strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.644 kb on - strand at 757.644 kb on - strand at 757.815 kb on - strand at 757.815 kb on - strand at 757.815 kb on - strand at 758.005 kb on + strand, within GFF1894 at 758.006 kb on - strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.039 kb on - strand, within GFF1894 at 758.039 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.282 kb on - strand, within GFF1894 at 758.297 kb on - strand, within GFF1894
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 755,198 + GFF1891 0.34 -0.0 755,198 + GFF1891 0.34 +0.2 755,199 - GFF1891 0.34 +0.1 755,264 + GFF1891 0.42 +0.7 755,264 + GFF1891 0.42 -0.7 755,264 + GFF1891 0.42 +0.2 755,264 + GFF1891 0.42 +0.1 755,265 - GFF1891 0.42 +0.1 755,265 - GFF1891 0.42 +0.6 755,265 - GFF1891 0.42 -1.4 755,265 - GFF1891 0.42 -0.1 755,265 - GFF1891 0.42 -1.0 755,265 - GFF1891 0.42 -0.1 755,265 - GFF1891 0.42 +0.2 755,366 + GFF1891 0.56 +0.3 755,366 + GFF1891 0.56 -0.3 755,367 - GFF1891 0.56 +0.4 755,367 - GFF1891 0.56 +0.8 755,367 - GFF1891 0.56 -0.0 755,367 - GFF1891 0.56 -0.6 755,367 - GFF1891 0.56 +0.9 755,519 + GFF1891 0.76 +0.6 755,519 + GFF1891 0.76 -0.6 755,879 - -0.6 755,879 - -0.9 755,996 - -0.0 756,205 + GFF1892 0.12 -0.1 756,205 + GFF1892 0.12 -0.5 756,205 + GFF1892 0.12 -1.1 756,206 - GFF1892 0.12 +0.0 756,206 - GFF1892 0.12 +0.2 756,301 + GFF1892 0.19 +0.4 756,301 + GFF1892 0.19 +0.1 756,302 - GFF1892 0.20 -0.2 756,565 + GFF1892 0.40 -0.0 756,565 + GFF1892 0.40 -0.3 756,566 - GFF1892 0.40 -0.7 756,566 - GFF1892 0.40 -0.4 756,688 + GFF1892 0.49 +0.0 756,712 + GFF1892 0.51 -2.0 757,219 + +0.2 757,220 - +0.1 757,220 - -0.3 757,639 + -0.3 757,639 + +0.3 757,639 + -0.3 757,639 + -1.5 757,639 + -1.0 757,639 + +0.5 757,639 + +0.4 757,640 - -0.4 757,643 + -1.2 757,643 + -0.1 757,643 + +0.1 757,643 + -0.0 757,643 + +0.4 757,644 - +0.3 757,644 - -0.3 757,815 - -0.3 757,815 - +1.3 757,815 - -0.3 758,005 + GFF1894 0.15 -0.0 758,006 - GFF1894 0.15 +0.2 758,038 + GFF1894 0.17 -0.0 758,038 + GFF1894 0.17 -0.0 758,038 + GFF1894 0.17 +0.7 758,038 + GFF1894 0.17 -0.1 758,038 + GFF1894 0.17 +0.1 758,038 + GFF1894 0.17 +0.5 758,039 - GFF1894 0.17 +0.4 758,039 - GFF1894 0.17 -0.0 758,126 - GFF1894 0.23 +0.0 758,126 - GFF1894 0.23 +1.0 758,126 - GFF1894 0.23 -1.1 758,126 - GFF1894 0.23 +0.3 758,282 - GFF1894 0.32 -0.3 758,297 - GFF1894 0.33 -1.0
Or see this region's nucleotide sequence