Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1816

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1814 and GFF1815 are separated by 5 nucleotidesGFF1815 and GFF1816 are separated by 86 nucleotidesGFF1816 and GFF1817 are separated by 29 nucleotidesGFF1817 and GFF1818 are separated by 87 nucleotides GFF1814 - Glutathione S-transferase (EC 2.5.1.18), at 681,900 to 682,550 GFF1814 GFF1815 - amidohydrolase 2, at 682,556 to 683,449 GFF1815 GFF1816 - Dienelactone hydrolase family, at 683,536 to 684,219 GFF1816 GFF1817 - 2-hydroxychromene-2-carboxylate isomerase, at 684,249 to 684,848 GFF1817 GFF1818 - Short chain dehydrogenase, at 684,936 to 685,694 GFF1818 Position (kb) 683 684 685Strain fitness (log2 ratio) -2 -1 0 1 2at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.732 kb on - strand, within GFF1815at 683.037 kb on + strand, within GFF1815at 683.037 kb on + strand, within GFF1815at 683.038 kb on - strand, within GFF1815at 683.038 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.160 kb on + strand, within GFF1815at 683.161 kb on - strand, within GFF1815at 683.161 kb on - strand, within GFF1815at 683.361 kb on + strandat 683.361 kb on + strandat 683.362 kb on - strandat 683.362 kb on - strandat 683.394 kb on + strandat 683.394 kb on + strandat 683.394 kb on + strandat 683.395 kb on - strandat 683.603 kb on + strandat 683.603 kb on + strandat 683.603 kb on + strandat 683.603 kb on + strandat 683.604 kb on - strandat 683.604 kb on - strandat 683.792 kb on + strand, within GFF1816at 683.792 kb on + strand, within GFF1816at 683.792 kb on + strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.795 kb on + strand, within GFF1816at 683.796 kb on - strand, within GFF1816at 684.000 kb on - strand, within GFF1816at 684.056 kb on + strand, within GFF1816at 684.167 kb on + strandat 684.167 kb on + strandat 684.168 kb on - strandat 684.319 kb on + strand, within GFF1817at 684.319 kb on + strand, within GFF1817at 684.319 kb on + strand, within GFF1817at 684.319 kb on + strand, within GFF1817at 684.320 kb on - strand, within GFF1817at 684.320 kb on - strand, within GFF1817at 684.320 kb on - strand, within GFF1817at 684.374 kb on - strand, within GFF1817at 684.800 kb on - strandat 684.826 kb on + strandat 684.826 kb on + strandat 684.826 kb on + strandat 684.826 kb on + strandat 684.826 kb on + strandat 684.826 kb on + strandat 684.827 kb on - strandat 684.827 kb on - strandat 684.827 kb on - strandat 684.830 kb on - strandat 684.870 kb on + strandat 684.870 kb on + strandat 684.870 kb on + strandat 684.870 kb on + strandat 684.871 kb on - strandat 684.901 kb on + strandat 684.901 kb on + strandat 684.901 kb on + strandat 684.902 kb on - strandat 684.935 kb on + strandat 684.936 kb on - strandat 685.044 kb on + strand, within GFF1818at 685.044 kb on + strand, within GFF1818at 685.044 kb on + strand, within GFF1818at 685.044 kb on + strand, within GFF1818at 685.045 kb on - strand, within GFF1818at 685.045 kb on - strand, within GFF1818at 685.045 kb on - strand, within GFF1818

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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682,674 + GFF1815 0.13 -1.2
682,674 + GFF1815 0.13 +0.8
682,674 + GFF1815 0.13 -0.5
682,675 - GFF1815 0.13 -0.2
682,675 - GFF1815 0.13 -1.4
682,731 + GFF1815 0.20 -0.3
682,731 + GFF1815 0.20 +0.1
682,731 + GFF1815 0.20 -0.0
682,732 - GFF1815 0.20 -0.6
683,037 + GFF1815 0.54 -1.4
683,037 + GFF1815 0.54 -0.2
683,038 - GFF1815 0.54 -0.0
683,038 - GFF1815 0.54 -0.0
683,143 - GFF1815 0.66 +0.5
683,143 - GFF1815 0.66 -0.6
683,143 - GFF1815 0.66 +0.1
683,143 - GFF1815 0.66 +0.5
683,143 - GFF1815 0.66 -0.0
683,143 - GFF1815 0.66 +0.5
683,143 - GFF1815 0.66 -1.5
683,143 - GFF1815 0.66 -2.5
683,160 + GFF1815 0.68 +0.1
683,161 - GFF1815 0.68 -0.4
683,161 - GFF1815 0.68 +0.0
683,361 + +0.1
683,361 + -0.5
683,362 - -0.3
683,362 - -0.5
683,394 + +0.3
683,394 + +1.1
683,394 + -0.5
683,395 - -0.8
683,603 + +0.3
683,603 + -1.5
683,603 + -0.3
683,603 + +0.1
683,604 - -0.1
683,604 - -1.0
683,792 + GFF1816 0.37 -0.4
683,792 + GFF1816 0.37 -0.5
683,792 + GFF1816 0.37 -0.2
683,793 - GFF1816 0.38 +0.4
683,793 - GFF1816 0.38 +0.4
683,793 - GFF1816 0.38 -0.1
683,793 - GFF1816 0.38 -0.2
683,795 + GFF1816 0.38 +2.1
683,796 - GFF1816 0.38 +0.2
684,000 - GFF1816 0.68 +0.5
684,056 + GFF1816 0.76 +0.6
684,167 + -0.3
684,167 + -1.0
684,168 - -0.5
684,319 + GFF1817 0.12 +0.2
684,319 + GFF1817 0.12 +0.2
684,319 + GFF1817 0.12 +0.0
684,319 + GFF1817 0.12 +0.7
684,320 - GFF1817 0.12 -1.9
684,320 - GFF1817 0.12 +0.5
684,320 - GFF1817 0.12 +0.4
684,374 - GFF1817 0.21 +0.9
684,800 - +0.0
684,826 + -0.3
684,826 + -0.5
684,826 + -0.6
684,826 + -1.5
684,826 + +0.4
684,826 + +0.4
684,827 - +0.1
684,827 - -1.0
684,827 - +0.1
684,830 - -0.6
684,870 + -1.8
684,870 + +0.4
684,870 + -0.3
684,870 + -0.6
684,871 - -0.2
684,901 + +0.2
684,901 + +0.1
684,901 + -0.3
684,902 - +0.4
684,935 + -0.6
684,936 - +0.5
685,044 + GFF1818 0.14 -0.1
685,044 + GFF1818 0.14 +0.5
685,044 + GFF1818 0.14 -0.0
685,044 + GFF1818 0.14 -0.0
685,045 - GFF1818 0.14 +0.3
685,045 - GFF1818 0.14 +0.4
685,045 - GFF1818 0.14 -0.3

Or see this region's nucleotide sequence