Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1656 and GFF1657 are separated by 141 nucleotides GFF1657 and GFF1658 overlap by 4 nucleotides GFF1658 and GFF1659 are separated by 42 nucleotides
GFF1656 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 508,739 to 509,770
GFF1656
GFF1657 - Transcriptional regulator, IclR family, at 509,912 to 510,784
GFF1657
GFF1658 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 510,781 to 511,710
GFF1658
GFF1659 - Probable lipoprotein transmembrane, at 511,753 to 512,457
GFF1659
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1
2 at 509.391 kb on + strand, within GFF1656 at 509.391 kb on + strand, within GFF1656 at 509.391 kb on + strand, within GFF1656 at 509.951 kb on + strand at 509.951 kb on + strand at 509.952 kb on - strand at 509.952 kb on - strand at 509.952 kb on - strand at 509.952 kb on - strand at 510.059 kb on + strand, within GFF1657 at 510.059 kb on + strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.278 kb on + strand, within GFF1657 at 510.278 kb on + strand, within GFF1657 at 510.279 kb on - strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.853 kb on + strand at 510.853 kb on + strand at 510.853 kb on + strand at 510.854 kb on - strand at 510.854 kb on - strand at 510.854 kb on - strand at 510.854 kb on - strand at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 511.030 kb on + strand, within GFF1658 at 511.030 kb on + strand, within GFF1658 at 511.031 kb on - strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.156 kb on + strand, within GFF1658 at 511.156 kb on + strand, within GFF1658 at 511.157 kb on - strand, within GFF1658 at 511.248 kb on - strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.688 kb on + strand at 511.688 kb on + strand at 511.688 kb on + strand at 511.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 509,391 + GFF1656 0.63 +0.3 509,391 + GFF1656 0.63 +0.7 509,391 + GFF1656 0.63 +0.1 509,951 + -0.4 509,951 + +0.0 509,952 - -0.2 509,952 - -0.1 509,952 - -0.0 509,952 - -0.0 510,059 + GFF1657 0.17 +0.5 510,059 + GFF1657 0.17 +0.0 510,060 - GFF1657 0.17 +1.0 510,060 - GFF1657 0.17 -0.5 510,060 - GFF1657 0.17 +0.8 510,060 - GFF1657 0.17 -0.3 510,278 + GFF1657 0.42 +0.2 510,278 + GFF1657 0.42 -0.2 510,279 - GFF1657 0.42 +0.3 510,497 + GFF1657 0.67 -1.1 510,497 + GFF1657 0.67 +0.8 510,497 + GFF1657 0.67 -0.4 510,498 - GFF1657 0.67 -0.1 510,498 - GFF1657 0.67 +0.0 510,498 - GFF1657 0.67 +0.1 510,853 + +0.9 510,853 + +0.3 510,853 + -0.2 510,854 - -0.2 510,854 - +0.2 510,854 - +0.3 510,854 - +1.1 510,913 + GFF1658 0.14 -0.5 510,913 + GFF1658 0.14 +0.2 510,913 + GFF1658 0.14 +0.2 510,913 + GFF1658 0.14 -0.2 510,913 + GFF1658 0.14 +0.1 510,913 + GFF1658 0.14 -0.3 510,914 - GFF1658 0.14 +0.6 510,914 - GFF1658 0.14 +0.5 510,914 - GFF1658 0.14 -0.5 510,914 - GFF1658 0.14 -0.2 511,030 + GFF1658 0.27 +0.3 511,030 + GFF1658 0.27 -0.3 511,031 - GFF1658 0.27 -0.5 511,078 + GFF1658 0.32 -0.1 511,078 + GFF1658 0.32 -0.5 511,078 + GFF1658 0.32 +0.8 511,078 + GFF1658 0.32 +0.0 511,078 + GFF1658 0.32 -0.3 511,078 + GFF1658 0.32 +0.4 511,078 + GFF1658 0.32 -0.3 511,079 - GFF1658 0.32 +0.3 511,079 - GFF1658 0.32 +1.0 511,079 - GFF1658 0.32 -0.3 511,079 - GFF1658 0.32 +0.7 511,079 - GFF1658 0.32 +0.1 511,079 - GFF1658 0.32 -0.5 511,079 - GFF1658 0.32 +1.9 511,156 + GFF1658 0.40 -0.1 511,156 + GFF1658 0.40 -0.2 511,157 - GFF1658 0.40 -0.4 511,248 - GFF1658 0.50 +0.2 511,324 + GFF1658 0.58 +0.0 511,324 + GFF1658 0.58 +0.3 511,324 + GFF1658 0.58 +1.0 511,324 + GFF1658 0.58 -0.0 511,325 - GFF1658 0.58 +0.0 511,325 - GFF1658 0.58 -0.5 511,325 - GFF1658 0.58 +0.9 511,325 - GFF1658 0.58 +0.4 511,325 - GFF1658 0.58 +0.2 511,688 + -0.1 511,688 + -0.9 511,688 + -0.1 511,689 - +0.4
Or see this region's nucleotide sequence