Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1653 and GFF1654 are separated by 70 nucleotides GFF1654 and GFF1655 overlap by 4 nucleotides GFF1655 and GFF1656 are separated by 3 nucleotides
GFF1653 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 506,723 to 507,073
GFF1653
GFF1654 - Transcriptional regulator, LysR family, at 507,144 to 508,061
GFF1654
GFF1655 - hypothetical protein, at 508,058 to 508,735
GFF1655
GFF1656 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 508,739 to 509,770
GFF1656
Position (kb) 508
509 Strain fitness (log2 ratio) -2
-1
0
1 at 507.133 kb on + strand at 507.151 kb on + strand at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.756 kb on + strand, within GFF1654 at 507.757 kb on - strand, within GFF1654 at 507.972 kb on + strand at 507.973 kb on - strand at 508.059 kb on + strand at 508.083 kb on + strand at 508.083 kb on - strand at 508.084 kb on - strand at 508.095 kb on + strand at 508.189 kb on - strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.558 kb on - strand, within GFF1655 at 508.786 kb on - strand at 509.391 kb on + strand, within GFF1656 at 509.391 kb on + strand, within GFF1656 at 509.391 kb on + strand, within GFF1656
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 507,133 + +0.0 507,151 + +0.2 507,684 + GFF1654 0.59 -0.2 507,684 + GFF1654 0.59 -0.5 507,684 + GFF1654 0.59 -1.9 507,684 + GFF1654 0.59 -0.1 507,684 + GFF1654 0.59 -0.1 507,685 - GFF1654 0.59 +0.1 507,685 - GFF1654 0.59 -0.2 507,756 + GFF1654 0.67 -0.8 507,757 - GFF1654 0.67 +0.1 507,972 + -0.3 507,973 - -0.7 508,059 + -0.7 508,083 + +0.4 508,083 - +0.8 508,084 - +0.2 508,095 + -0.0 508,189 - GFF1655 0.19 -0.4 508,557 + GFF1655 0.74 -0.1 508,557 + GFF1655 0.74 +0.0 508,557 + GFF1655 0.74 -0.1 508,558 - GFF1655 0.74 -0.9 508,786 - -0.3 509,391 + GFF1656 0.63 +0.3 509,391 + GFF1656 0.63 +0.7 509,391 + GFF1656 0.63 +0.1
Or see this region's nucleotide sequence