Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1592 and GFF1593 are separated by 378 nucleotides GFF1593 and GFF1594 are separated by 82 nucleotides
GFF1592 - putative exported protein, at 447,306 to 448,211
GFF1592
GFF1593 - hypothetical protein, at 448,590 to 449,189
GFF1593
GFF1594 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 449,272 to 450,252
GFF1594
Position (kb) 448
449
450 Strain fitness (log2 ratio) -1
0
1 at 448.006 kb on + strand, within GFF1592 at 448.121 kb on + strand at 448.121 kb on + strand at 448.265 kb on - strand at 448.265 kb on - strand at 448.371 kb on - strand at 448.491 kb on - strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.568 kb on + strand at 448.568 kb on + strand at 448.737 kb on + strand, within GFF1593 at 448.738 kb on - strand, within GFF1593 at 449.079 kb on + strand, within GFF1593 at 449.151 kb on + strand at 449.151 kb on + strand at 449.187 kb on + strand at 449.187 kb on + strand at 449.443 kb on + strand, within GFF1594 at 449.479 kb on + strand, within GFF1594 at 449.479 kb on + strand, within GFF1594 at 449.479 kb on + strand, within GFF1594 at 449.480 kb on - strand, within GFF1594 at 449.701 kb on + strand, within GFF1594 at 449.701 kb on + strand, within GFF1594 at 449.702 kb on - strand, within GFF1594 at 449.945 kb on - strand, within GFF1594 at 449.945 kb on - strand, within GFF1594
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 448,006 + GFF1592 0.77 -0.6 448,121 + -0.6 448,121 + +0.3 448,265 - +0.7 448,265 - +0.7 448,371 - +0.2 448,491 - -0.1 448,556 + -0.7 448,556 + -0.1 448,556 + -0.3 448,556 + +0.3 448,556 + -0.6 448,556 + -1.5 448,556 + -0.3 448,557 - +0.6 448,557 - -1.2 448,557 - +0.2 448,557 - -1.1 448,557 - +0.4 448,557 - +0.1 448,557 - +1.5 448,557 - -0.0 448,557 - +0.4 448,557 - +0.1 448,557 - -1.1 448,557 - -1.2 448,568 + -0.8 448,568 + -0.1 448,737 + GFF1593 0.24 -0.3 448,738 - GFF1593 0.25 -1.3 449,079 + GFF1593 0.81 -0.6 449,151 + -1.2 449,151 + -0.9 449,187 + +0.1 449,187 + -0.8 449,443 + GFF1594 0.17 -0.3 449,479 + GFF1594 0.21 -0.9 449,479 + GFF1594 0.21 +0.3 449,479 + GFF1594 0.21 -0.8 449,480 - GFF1594 0.21 +0.8 449,701 + GFF1594 0.44 +0.8 449,701 + GFF1594 0.44 +0.1 449,702 - GFF1594 0.44 +0.1 449,945 - GFF1594 0.69 +0.6 449,945 - GFF1594 0.69 +0.6
Or see this region's nucleotide sequence