Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF156 and GFF157 are separated by 55 nucleotides GFF157 and GFF158 are separated by 7 nucleotides GFF158 and GFF159 overlap by 1 nucleotides
GFF156 - ABC-type multidrug transport system, ATPase component, at 169,611 to 170,573
GFF156
GFF157 - Radical SAM domain protein, at 170,629 to 171,723
GFF157
GFF158 - NAD synthetase (EC 6.3.1.5), at 171,731 to 172,702
GFF158
GFF159 - Acyl carrier protein, at 172,702 to 172,956
GFF159
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.762 kb on + strand, within GFF156 at 169.762 kb on + strand, within GFF156 at 169.762 kb on + strand, within GFF156 at 169.762 kb on + strand, within GFF156 at 169.763 kb on - strand, within GFF156 at 169.763 kb on - strand, within GFF156 at 169.763 kb on - strand, within GFF156 at 169.966 kb on + strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 170.204 kb on - strand, within GFF156 at 170.326 kb on + strand, within GFF156 at 170.503 kb on + strand at 170.503 kb on + strand at 170.504 kb on - strand at 170.900 kb on - strand, within GFF157 at 170.900 kb on - strand, within GFF157 at 170.900 kb on - strand, within GFF157 at 170.905 kb on + strand, within GFF157 at 170.927 kb on - strand, within GFF157 at 170.927 kb on - strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.065 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.431 kb on - strand, within GFF157 at 171.431 kb on - strand, within GFF157 at 171.553 kb on + strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.801 kb on - strand at 171.904 kb on - strand, within GFF158 at 171.918 kb on + strand, within GFF158 at 171.919 kb on - strand, within GFF158 at 171.948 kb on + strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 172.030 kb on - strand, within GFF158 at 172.030 kb on - strand, within GFF158 at 172.096 kb on - strand, within GFF158 at 172.128 kb on + strand, within GFF158 at 172.128 kb on + strand, within GFF158 at 172.128 kb on + strand, within GFF158 at 172.150 kb on - strand, within GFF158 at 172.152 kb on + strand, within GFF158 at 172.152 kb on + strand, within GFF158 at 172.152 kb on + strand, within GFF158 at 172.210 kb on - strand, within GFF158 at 172.330 kb on - strand, within GFF158 at 172.335 kb on + strand, within GFF158 at 172.335 kb on + strand, within GFF158 at 172.378 kb on - strand, within GFF158
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 169,762 + GFF156 0.16 -0.3 169,762 + GFF156 0.16 +0.4 169,762 + GFF156 0.16 -0.4 169,762 + GFF156 0.16 -0.6 169,763 - GFF156 0.16 +0.4 169,763 - GFF156 0.16 +0.1 169,763 - GFF156 0.16 +1.0 169,966 + GFF156 0.37 +0.8 169,967 - GFF156 0.37 +0.3 169,967 - GFF156 0.37 -0.2 169,967 - GFF156 0.37 -1.1 169,967 - GFF156 0.37 -0.3 170,204 - GFF156 0.62 +0.5 170,326 + GFF156 0.74 -0.5 170,503 + -1.3 170,503 + -0.3 170,504 - -0.8 170,900 - GFF157 0.25 -1.2 170,900 - GFF157 0.25 -1.8 170,900 - GFF157 0.25 -0.1 170,905 + GFF157 0.25 +0.9 170,927 - GFF157 0.27 -0.3 170,927 - GFF157 0.27 +0.0 171,064 + GFF157 0.40 +0.1 171,064 + GFF157 0.40 -0.1 171,064 + GFF157 0.40 -0.6 171,065 - GFF157 0.40 -0.1 171,221 - GFF157 0.54 -0.4 171,221 - GFF157 0.54 -0.5 171,221 - GFF157 0.54 -0.1 171,430 + GFF157 0.73 -0.3 171,430 + GFF157 0.73 -1.6 171,430 + GFF157 0.73 -0.1 171,431 - GFF157 0.73 -0.5 171,431 - GFF157 0.73 +0.9 171,553 + GFF157 0.84 +0.3 171,554 - GFF157 0.84 +0.2 171,554 - GFF157 0.84 +2.1 171,554 - GFF157 0.84 -0.4 171,801 - +1.2 171,904 - GFF158 0.18 +0.0 171,918 + GFF158 0.19 -1.2 171,919 - GFF158 0.19 +0.5 171,948 + GFF158 0.22 +0.1 171,949 - GFF158 0.22 -1.8 171,949 - GFF158 0.22 -0.0 171,949 - GFF158 0.22 +0.3 171,949 - GFF158 0.22 +0.3 172,030 - GFF158 0.31 +0.5 172,030 - GFF158 0.31 +0.1 172,096 - GFF158 0.38 +0.6 172,128 + GFF158 0.41 +0.1 172,128 + GFF158 0.41 +0.3 172,128 + GFF158 0.41 -1.4 172,150 - GFF158 0.43 +0.4 172,152 + GFF158 0.43 -0.8 172,152 + GFF158 0.43 -0.6 172,152 + GFF158 0.43 +0.3 172,210 - GFF158 0.49 -0.4 172,330 - GFF158 0.62 -0.3 172,335 + GFF158 0.62 -0.0 172,335 + GFF158 0.62 +0.0 172,378 - GFF158 0.67 +0.8
Or see this region's nucleotide sequence