Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1560 and GFF1561 are separated by 2 nucleotides GFF1561 and GFF1562 are separated by 1 nucleotides GFF1562 and GFF1563 are separated by 137 nucleotides
GFF1560 - Fumarylacetoacetate hydrolase family protein, at 415,262 to 416,236
GFF1560
GFF1561 - hypothetical protein, at 416,239 to 417,192
GFF1561
GFF1562 - hypothetical protein, at 417,194 to 417,643
GFF1562
GFF1563 - Outer membrane lipoprotein blc precursor, at 417,781 to 418,320
GFF1563
Position (kb) 416
417
418 Strain fitness (log2 ratio) -1
0
1 at 415.418 kb on + strand, within GFF1560 at 415.419 kb on - strand, within GFF1560 at 415.602 kb on - strand, within GFF1560 at 416.282 kb on + strand at 416.491 kb on + strand, within GFF1561 at 416.590 kb on + strand, within GFF1561 at 416.591 kb on - strand, within GFF1561 at 416.671 kb on + strand, within GFF1561 at 416.672 kb on - strand, within GFF1561 at 416.672 kb on - strand, within GFF1561 at 416.672 kb on - strand, within GFF1561 at 417.053 kb on - strand, within GFF1561 at 417.195 kb on + strand at 417.196 kb on - strand at 417.196 kb on - strand at 417.196 kb on - strand at 417.199 kb on - strand at 417.288 kb on + strand, within GFF1562 at 417.288 kb on + strand, within GFF1562 at 417.288 kb on + strand, within GFF1562 at 417.289 kb on - strand, within GFF1562 at 417.456 kb on + strand, within GFF1562 at 417.531 kb on + strand, within GFF1562 at 417.532 kb on - strand, within GFF1562 at 417.900 kb on - strand, within GFF1563 at 417.962 kb on + strand, within GFF1563
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 415,418 + GFF1560 0.16 +0.2 415,419 - GFF1560 0.16 -1.2 415,602 - GFF1560 0.35 +0.5 416,282 + -1.2 416,491 + GFF1561 0.26 -1.2 416,590 + GFF1561 0.37 +0.3 416,591 - GFF1561 0.37 -1.7 416,671 + GFF1561 0.45 -0.7 416,672 - GFF1561 0.45 -0.0 416,672 - GFF1561 0.45 +0.1 416,672 - GFF1561 0.45 -0.4 417,053 - GFF1561 0.85 -0.2 417,195 + +0.7 417,196 - +0.0 417,196 - -0.5 417,196 - +0.1 417,199 - +0.1 417,288 + GFF1562 0.21 -0.8 417,288 + GFF1562 0.21 -1.7 417,288 + GFF1562 0.21 -0.3 417,289 - GFF1562 0.21 -0.6 417,456 + GFF1562 0.58 -0.4 417,531 + GFF1562 0.75 +0.2 417,532 - GFF1562 0.75 +0.1 417,900 - GFF1563 0.22 -0.6 417,962 + GFF1563 0.34 -0.1
Or see this region's nucleotide sequence