Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1544

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
397,932	+		GFF1543	0.52	+0.1
398,025	+		GFF1543	0.62	-0.1
398,026	-		GFF1543	0.62	-1.1
398,026	-		GFF1543	0.62	-0.7
398,073	+		GFF1543	0.68	-0.5
398,283	+				+0.0
398,283	+				-0.8
398,283	+				+0.3
398,316	+				+0.2
398,442	+				+0.4
398,442	+				-0.2
398,443	-				+1.0
398,443	-				-0.3
398,667	+		GFF1544	0.15	-0.1
398,667	+		GFF1544	0.15	-1.5
398,667	+		GFF1544	0.15	-1.7
398,667	+		GFF1544	0.15	-0.4
398,667	+		GFF1544	0.15	-1.7
398,668	-		GFF1544	0.15	-1.9
398,668	-		GFF1544	0.15	-2.9
398,668	-		GFF1544	0.15	-1.5
398,668	-		GFF1544	0.15	-1.6
398,802	+		GFF1544	0.28	-0.1
398,802	+		GFF1544	0.28	-0.5
399,159	+		GFF1544	0.62	-1.7
399,160	-		GFF1544	0.62	-2.4
399,675	-				-0.8
399,690	-				-0.8
400,136	+		GFF1545	0.41	+0.7