Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF151 and GFF152 are separated by 50 nucleotides GFF152 and GFF153 are separated by 0 nucleotides GFF153 and GFF154 overlap by 31 nucleotides GFF154 and GFF155 are separated by 14 nucleotides
GFF151 - Short-chain dehydrogenase/reductase SDR, at 166,858 to 167,691
GFF151
GFF152 - hypothetical protein, at 167,742 to 168,389
GFF152
GFF153 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,390 to 168,701
GFF153
GFF154 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,671 to 168,826
GFF154
GFF155 - ABC-type multidrug transport system, permease component, at 168,841 to 169,608
GFF155
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.881 kb on - strand at 166.884 kb on - strand at 167.362 kb on + strand, within GFF151 at 167.362 kb on + strand, within GFF151 at 167.363 kb on - strand, within GFF151 at 167.524 kb on + strand, within GFF151 at 167.534 kb on - strand, within GFF151 at 167.645 kb on - strand at 168.042 kb on + strand, within GFF152 at 168.043 kb on - strand, within GFF152 at 168.173 kb on + strand, within GFF152 at 168.388 kb on - strand at 168.388 kb on - strand at 168.475 kb on + strand, within GFF153 at 168.475 kb on + strand, within GFF153 at 168.476 kb on - strand, within GFF153 at 168.476 kb on - strand, within GFF153 at 168.762 kb on + strand, within GFF154 at 168.857 kb on + strand at 168.857 kb on + strand at 168.858 kb on - strand at 168.956 kb on + strand, within GFF155 at 168.957 kb on - strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.987 kb on - strand, within GFF155 at 169.046 kb on + strand, within GFF155 at 169.286 kb on + strand, within GFF155 at 169.286 kb on + strand, within GFF155 at 169.286 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.362 kb on - strand, within GFF155 at 169.362 kb on - strand, within GFF155
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 166,881 - +0.3 166,884 - +0.8 167,362 + GFF151 0.60 -0.2 167,362 + GFF151 0.60 -0.4 167,363 - GFF151 0.61 -0.2 167,524 + GFF151 0.80 +0.3 167,534 - GFF151 0.81 -0.3 167,645 - -0.3 168,042 + GFF152 0.46 -0.9 168,043 - GFF152 0.46 +1.0 168,173 + GFF152 0.67 -0.8 168,388 - +0.3 168,388 - -0.7 168,475 + GFF153 0.27 -0.3 168,475 + GFF153 0.27 +0.5 168,476 - GFF153 0.28 -0.6 168,476 - GFF153 0.28 -1.2 168,762 + GFF154 0.58 +0.5 168,857 + +1.5 168,857 + +0.4 168,858 - +0.2 168,956 + GFF155 0.15 +0.2 168,957 - GFF155 0.15 +0.1 168,986 + GFF155 0.19 -0.9 168,986 + GFF155 0.19 -0.0 168,986 + GFF155 0.19 -0.0 168,986 + GFF155 0.19 -0.6 168,987 - GFF155 0.19 +0.0 169,046 + GFF155 0.27 +0.2 169,286 + GFF155 0.58 -2.3 169,286 + GFF155 0.58 +0.3 169,286 + GFF155 0.58 -0.7 169,361 + GFF155 0.68 -0.0 169,361 + GFF155 0.68 -0.2 169,361 + GFF155 0.68 -0.1 169,361 + GFF155 0.68 -0.4 169,361 + GFF155 0.68 +0.3 169,362 - GFF155 0.68 +1.8 169,362 - GFF155 0.68 +0.3
Or see this region's nucleotide sequence