Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1518

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
364,239	+		GFF1515	0.43	-0.1
364,240	-		GFF1515	0.43	-0.3
364,428	+				+0.3
364,443	+				-0.6
364,443	+				+0.4
364,444	-				-0.0
364,444	-				-0.5
364,690	-		GFF1516	0.49	-0.5
364,858	-				-0.1
364,858	-				+0.4
364,919	+		GFF1517	0.11	+0.2
364,920	-		GFF1517	0.11	-0.8
365,057	+		GFF1517	0.65	-1.0
365,057	+		GFF1517	0.65	+0.1
365,925	+		GFF1518	0.22	-0.2
365,925	+		GFF1518	0.22	-0.6
365,925	+		GFF1518	0.22	+1.0
366,162	+		GFF1518	0.29	-0.1
366,163	-		GFF1518	0.29	-0.0
367,086	+		GFF1518	0.58	-0.3
367,086	+		GFF1518	0.58	-0.3
367,410	+		GFF1518	0.68	-0.2
367,920	+		GFF1518	0.84	+0.5
367,921	-		GFF1518	0.84	+0.0
368,005	-		GFF1518	0.86	+0.0
368,005	-		GFF1518	0.86	+0.1
368,005	-		GFF1518	0.86	-0.5
368,178	+				+0.8
368,179	-				-0.3
368,179	-				+0.4
368,179	-				+0.5
368,196	+				-0.1
368,196	+				-0.8
368,196	+				+0.2
368,197	-				-0.3
368,462	-				+0.1
368,462	-				+0.3
368,537	-				+0.5
368,569	+				-0.1
368,569	+				-1.3
368,569	+				+0.1
368,570	-				+1.0
368,595	+				+0.5
368,595	+				+0.5
368,595	+				+0.1
368,595	+				+1.1
368,596	-				-0.1
368,596	-				+0.6
368,596	-				+0.2
368,596	-				+0.5
368,596	-				+0.1
368,596	-				-0.1
368,596	-				-0.2
368,653	-				+1.9
368,653	-				+0.3
368,663	-				-0.3
368,663	-				-0.4
368,663	-				-1.3
368,699	+				+2.0
368,699	+				+1.2
368,715	+				+0.4
368,765	+				+2.1
368,765	+				+1.0
368,766	-				-0.4
368,766	-				-2.3
368,787	-				-0.3
368,837	+				+0.5
368,929	+				+0.1
368,929	+				+0.2
368,929	+				+1.5
368,929	+				-0.1
368,978	+				-0.5
368,978	+				-0.8
368,978	+				+0.2
368,978	+				-0.3
368,979	-				+0.5
369,036	-				-0.4
369,036	-				+0.4
369,055	+				-0.2
369,056	-				+1.7
369,056	-				+0.5
369,056	-				+0.1
369,056	-				+0.9
369,067	+				+0.1
369,124	+				-0.0
369,124	+				+0.1
369,124	+				+0.2
369,124	+				-0.1
369,124	+				-0.0
369,125	-				-1.5
369,125	-				+0.1
369,125	-				+0.7
369,125	-				-0.5
369,125	-				+0.6
369,125	-				+0.1
369,125	-				+1.1
369,125	-				+0.2
369,125	-				+0.2
369,207	+				+0.4
369,207	+				-0.1
369,207	+				-0.3
369,207	+				-0.1
369,207	-				-0.0
369,208	-				+0.4
369,208	-				-0.6
369,208	-				+0.8
369,208	-				+0.8
369,208	-				+0.4
369,324	-				+0.2
369,336	+				-0.1
369,337	-				+0.0
369,337	-				-0.2
369,392	-				-0.3
369,435	+				+0.3
369,436	-				+0.3
369,436	-				-0.1
369,436	-				+0.9