Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1434 and GFF1435 are separated by 12 nucleotides GFF1435 and GFF1436 are separated by 47 nucleotides GFF1436 and GFF1437 are separated by 15 nucleotides
GFF1434 - Chemotaxis response - phosphatase CheZ, at 290,649 to 291,275
GFF1434
GFF1435 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 291,288 to 291,674
GFF1435
GFF1436 - Flagellar motor rotation protein MotB, at 291,722 to 292,795
GFF1436
GFF1437 - Flagellar motor rotation protein MotA, at 292,811 to 293,668
GFF1437
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.113 kb on - strand, within GFF1434 at 291.113 kb on - strand, within GFF1434 at 291.172 kb on + strand, within GFF1434 at 291.362 kb on - strand, within GFF1435 at 292.156 kb on - strand, within GFF1436 at 292.245 kb on + strand, within GFF1436 at 292.246 kb on - strand, within GFF1436 at 292.246 kb on - strand, within GFF1436 at 292.608 kb on + strand, within GFF1436 at 292.609 kb on - strand, within GFF1436 at 292.908 kb on + strand, within GFF1437 at 292.909 kb on - strand, within GFF1437 at 293.014 kb on - strand, within GFF1437 at 293.014 kb on - strand, within GFF1437 at 293.039 kb on - strand, within GFF1437 at 293.326 kb on - strand, within GFF1437 at 293.417 kb on + strand, within GFF1437 at 293.418 kb on - strand, within GFF1437 at 293.455 kb on - strand, within GFF1437 at 293.612 kb on + strand at 293.612 kb on + strand at 293.612 kb on + strand at 293.612 kb on + strand at 293.613 kb on - strand at 293.619 kb on - strand at 293.733 kb on + strand at 293.746 kb on + strand at 293.746 kb on + strand at 293.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 291,112 + GFF1434 0.74 -0.1 291,112 + GFF1434 0.74 +0.5 291,112 + GFF1434 0.74 -0.1 291,112 + GFF1434 0.74 +0.4 291,112 + GFF1434 0.74 -0.5 291,112 + GFF1434 0.74 -0.3 291,112 + GFF1434 0.74 -0.3 291,113 - GFF1434 0.74 +0.1 291,113 - GFF1434 0.74 -0.9 291,172 + GFF1434 0.83 +0.7 291,362 - GFF1435 0.19 +0.1 292,156 - GFF1436 0.40 -0.1 292,245 + GFF1436 0.49 -0.1 292,246 - GFF1436 0.49 +0.8 292,246 - GFF1436 0.49 +0.3 292,608 + GFF1436 0.82 +0.5 292,609 - GFF1436 0.83 +0.3 292,908 + GFF1437 0.11 -0.1 292,909 - GFF1437 0.11 +0.2 293,014 - GFF1437 0.24 -0.2 293,014 - GFF1437 0.24 +0.1 293,039 - GFF1437 0.27 -0.2 293,326 - GFF1437 0.60 -0.7 293,417 + GFF1437 0.71 -0.6 293,418 - GFF1437 0.71 -0.4 293,455 - GFF1437 0.75 +0.1 293,612 + -0.6 293,612 + -0.2 293,612 + -0.0 293,612 + +1.0 293,613 - -0.3 293,619 - +1.5 293,733 + -0.2 293,746 + +0.2 293,746 + +0.3 293,747 - -0.8
Or see this region's nucleotide sequence