Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF137 and GFF138 are separated by 30 nucleotides GFF138 and GFF139 overlap by 4 nucleotides GFF139 and GFF140 are separated by 2 nucleotides
GFF137 - Glyoxylate carboligase (EC 4.1.1.47), at 151,809 to 153,596
GFF137
GFF138 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 153,627 to 154,445
GFF138
GFF139 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 154,442 to 155,350
GFF139
GFF140 - Transcriptional regulator, at 155,353 to 156,333
GFF140
Position (kb) 153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 152.682 kb on + strand, within GFF137 at 152.682 kb on + strand, within GFF137 at 152.682 kb on + strand, within GFF137 at 152.683 kb on - strand, within GFF137 at 152.841 kb on + strand, within GFF137 at 152.974 kb on - strand, within GFF137 at 153.027 kb on + strand, within GFF137 at 153.027 kb on + strand, within GFF137 at 153.027 kb on + strand, within GFF137 at 153.027 kb on + strand, within GFF137 at 153.028 kb on - strand, within GFF137 at 153.231 kb on + strand, within GFF137 at 153.232 kb on - strand, within GFF137 at 153.232 kb on - strand, within GFF137 at 153.232 kb on - strand, within GFF137 at 153.276 kb on + strand, within GFF137 at 153.277 kb on - strand, within GFF137 at 153.481 kb on + strand at 153.482 kb on - strand at 153.903 kb on + strand, within GFF138 at 153.903 kb on + strand, within GFF138 at 154.156 kb on - strand, within GFF138 at 154.156 kb on - strand, within GFF138 at 154.156 kb on - strand, within GFF138 at 154.323 kb on + strand, within GFF138
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 152,682 + GFF137 0.49 -3.3 152,682 + GFF137 0.49 -1.3 152,682 + GFF137 0.49 -1.2 152,683 - GFF137 0.49 -4.1 152,841 + GFF137 0.58 -2.7 152,974 - GFF137 0.65 -1.3 153,027 + GFF137 0.68 -3.9 153,027 + GFF137 0.68 -2.7 153,027 + GFF137 0.68 -1.1 153,027 + GFF137 0.68 -3.6 153,028 - GFF137 0.68 -3.6 153,231 + GFF137 0.80 -3.0 153,232 - GFF137 0.80 -1.3 153,232 - GFF137 0.80 -1.0 153,232 - GFF137 0.80 -1.8 153,276 + GFF137 0.82 -2.0 153,277 - GFF137 0.82 -2.6 153,481 + -1.1 153,482 - -1.3 153,903 + GFF138 0.34 -1.7 153,903 + GFF138 0.34 -2.0 154,156 - GFF138 0.65 -2.0 154,156 - GFF138 0.65 -2.0 154,156 - GFF138 0.65 -0.8 154,323 + GFF138 0.85 -2.2
Or see this region's nucleotide sequence