Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1208 and GFF1209 are separated by 14 nucleotides GFF1209 and GFF1210 are separated by 9 nucleotides GFF1210 and GFF1211 are separated by 113 nucleotides
GFF1208 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 71,555 to 73,609
GFF1208
GFF1209 - Probable transmembrane protein, at 73,624 to 74,364
GFF1209
GFF1210 - Probable lipoprotein, at 74,374 to 74,886
GFF1210
GFF1211 - Sulfate permease, at 75,000 to 76,643
GFF1211
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 73.750 kb on + strand, within GFF1209 at 73.750 kb on + strand, within GFF1209 at 73.918 kb on + strand, within GFF1209 at 73.919 kb on - strand, within GFF1209 at 73.919 kb on - strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.489 kb on + strand, within GFF1210 at 74.490 kb on - strand, within GFF1210 at 74.490 kb on - strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.502 kb on - strand, within GFF1210 at 74.525 kb on + strand, within GFF1210 at 74.666 kb on + strand, within GFF1210 at 74.667 kb on - strand, within GFF1210 at 74.667 kb on - strand, within GFF1210 at 74.667 kb on - strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.697 kb on - strand, within GFF1210 at 74.702 kb on + strand, within GFF1210 at 74.702 kb on + strand, within GFF1210 at 74.703 kb on - strand, within GFF1210 at 74.703 kb on - strand, within GFF1210 at 74.934 kb on - strand at 74.934 kb on - strand at 74.989 kb on - strand at 75.063 kb on + strand at 75.063 kb on + strand at 75.063 kb on + strand at 75.064 kb on - strand at 75.064 kb on - strand at 75.274 kb on - strand, within GFF1211
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 73,750 + GFF1209 0.17 -0.3 73,750 + GFF1209 0.17 -0.0 73,918 + GFF1209 0.40 -0.3 73,919 - GFF1209 0.40 -0.3 73,919 - GFF1209 0.40 +0.8 74,146 + GFF1209 0.70 +0.3 74,146 + GFF1209 0.70 -0.1 74,146 + GFF1209 0.70 +0.2 74,146 + GFF1209 0.70 +0.1 74,146 + GFF1209 0.70 +0.5 74,146 + GFF1209 0.70 -0.3 74,146 + GFF1209 0.70 +0.0 74,147 - GFF1209 0.71 +0.4 74,147 - GFF1209 0.71 -0.9 74,147 - GFF1209 0.71 +1.0 74,147 - GFF1209 0.71 +0.7 74,489 + GFF1210 0.22 -0.9 74,490 - GFF1210 0.23 -1.3 74,490 - GFF1210 0.23 +0.1 74,501 + GFF1210 0.25 -0.0 74,501 + GFF1210 0.25 +0.4 74,501 + GFF1210 0.25 -1.0 74,502 - GFF1210 0.25 +0.8 74,525 + GFF1210 0.29 +0.8 74,666 + GFF1210 0.57 +0.7 74,667 - GFF1210 0.57 +0.1 74,667 - GFF1210 0.57 +0.5 74,667 - GFF1210 0.57 +0.5 74,696 + GFF1210 0.63 -2.6 74,696 + GFF1210 0.63 -0.2 74,696 + GFF1210 0.63 +1.5 74,696 + GFF1210 0.63 -0.0 74,696 + GFF1210 0.63 +0.0 74,697 - GFF1210 0.63 +0.1 74,702 + GFF1210 0.64 -0.9 74,702 + GFF1210 0.64 -0.1 74,703 - GFF1210 0.64 -0.2 74,703 - GFF1210 0.64 -0.7 74,934 - -0.1 74,934 - -0.2 74,989 - -0.3 75,063 + +0.2 75,063 + +0.1 75,063 + +0.1 75,064 - -0.3 75,064 - -0.1 75,274 - GFF1211 0.17 -0.1
Or see this region's nucleotide sequence