Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1179 and GFF1180 are separated by 116 nucleotides GFF1180 and GFF1181 are separated by 9 nucleotides GFF1181 and GFF1182 are separated by 73 nucleotides
GFF1179 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 37,310 to 37,942
GFF1179
GFF1180 - membrane protein, at 38,059 to 38,643
GFF1180
GFF1181 - FIG006045: Sigma factor, ECF subfamily, at 38,653 to 39,210
GFF1181
GFF1182 - putative transmembrane sensor, at 39,284 to 40,405
GFF1182
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1
2 at 37.816 kb on - strand, within GFF1179 at 38.012 kb on + strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.046 kb on + strand at 38.046 kb on + strand at 38.046 kb on + strand at 38.047 kb on - strand at 38.392 kb on + strand, within GFF1180 at 38.392 kb on + strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.584 kb on + strand, within GFF1180 at 38.584 kb on + strand, within GFF1180 at 38.585 kb on - strand at 38.585 kb on - strand at 38.716 kb on + strand, within GFF1181 at 38.716 kb on + strand, within GFF1181 at 38.717 kb on - strand, within GFF1181 at 38.717 kb on - strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.975 kb on - strand, within GFF1181 at 38.975 kb on - strand, within GFF1181 at 39.758 kb on + strand, within GFF1182 at 39.986 kb on + strand, within GFF1182 at 39.986 kb on + strand, within GFF1182 at 39.986 kb on + strand, within GFF1182 at 39.987 kb on - strand, within GFF1182
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 37,816 - GFF1179 0.80 +0.0 38,012 + -1.4 38,013 - -1.2 38,013 - -0.7 38,013 - +2.2 38,013 - -0.8 38,046 + -0.7 38,046 + -0.6 38,046 + -0.0 38,047 - -0.2 38,392 + GFF1180 0.57 -0.4 38,392 + GFF1180 0.57 -0.5 38,393 - GFF1180 0.57 -0.3 38,393 - GFF1180 0.57 -0.3 38,393 - GFF1180 0.57 +0.3 38,416 + GFF1180 0.61 -0.1 38,416 + GFF1180 0.61 -0.2 38,416 + GFF1180 0.61 +0.2 38,584 + GFF1180 0.90 -1.2 38,584 + GFF1180 0.90 +0.5 38,585 - -0.0 38,585 - -0.1 38,716 + GFF1181 0.11 -0.4 38,716 + GFF1181 0.11 +0.3 38,717 - GFF1181 0.11 -0.7 38,717 - GFF1181 0.11 +0.8 38,974 + GFF1181 0.58 -0.4 38,974 + GFF1181 0.58 -0.1 38,974 + GFF1181 0.58 -1.1 38,974 + GFF1181 0.58 -1.2 38,975 - GFF1181 0.58 +0.1 38,975 - GFF1181 0.58 +0.2 39,758 + GFF1182 0.42 +1.5 39,986 + GFF1182 0.63 +0.5 39,986 + GFF1182 0.63 +1.0 39,986 + GFF1182 0.63 +0.8 39,987 - GFF1182 0.63 +0.8
Or see this region's nucleotide sequence