Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1158 and GFF1159 overlap by 47 nucleotides GFF1159 and GFF1160 overlap by 12 nucleotides GFF1160 and GFF1161 are separated by 27 nucleotides
GFF1158 - Transcriptional regulator, IclR family, at 14,944 to 15,906
GFF1158
GFF1159 - hypothetical protein, at 15,860 to 15,997
GFF1159
GFF1160 - Salicylate hydroxylase (EC 1.14.13.1), at 15,986 to 17,131
GFF1160
GFF1161 - Tricarboxylate transport protein TctC, at 17,159 to 18,124
GFF1161
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 15.167 kb on + strand, within GFF1158 at 15.167 kb on + strand, within GFF1158 at 15.168 kb on - strand, within GFF1158 at 15.168 kb on - strand, within GFF1158 at 15.168 kb on - strand, within GFF1158 at 15.290 kb on + strand, within GFF1158 at 15.290 kb on + strand, within GFF1158 at 15.291 kb on - strand, within GFF1158 at 15.291 kb on - strand, within GFF1158 at 15.291 kb on - strand, within GFF1158 at 15.389 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.393 kb on - strand, within GFF1158 at 15.393 kb on - strand, within GFF1158 at 15.393 kb on - strand, within GFF1158 at 15.503 kb on + strand, within GFF1158 at 15.504 kb on - strand, within GFF1158 at 15.504 kb on - strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.600 kb on - strand, within GFF1158 at 15.600 kb on - strand, within GFF1158 at 15.862 kb on - strand at 15.862 kb on - strand at 16.350 kb on - strand, within GFF1160 at 16.736 kb on + strand, within GFF1160 at 16.736 kb on + strand, within GFF1160 at 16.805 kb on + strand, within GFF1160 at 16.805 kb on + strand, within GFF1160 at 16.806 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 17.072 kb on + strand at 17.072 kb on + strand at 17.072 kb on + strand at 17.073 kb on - strand at 17.073 kb on - strand at 17.465 kb on + strand, within GFF1161 at 17.465 kb on + strand, within GFF1161 at 17.466 kb on - strand, within GFF1161 at 17.483 kb on + strand, within GFF1161 at 17.483 kb on + strand, within GFF1161 at 17.484 kb on - strand, within GFF1161 at 17.507 kb on + strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.529 kb on - strand, within GFF1161 at 17.582 kb on + strand, within GFF1161 at 17.582 kb on + strand, within GFF1161 at 17.583 kb on - strand, within GFF1161 at 17.583 kb on - strand, within GFF1161 at 17.621 kb on + strand, within GFF1161 at 17.622 kb on - strand, within GFF1161 at 17.622 kb on - strand, within GFF1161 at 17.622 kb on - strand, within GFF1161 at 18.014 kb on + strand, within GFF1161 at 18.014 kb on + strand, within GFF1161 at 18.015 kb on - strand, within GFF1161 at 18.032 kb on + strand at 18.032 kb on + strand at 18.032 kb on + strand at 18.032 kb on + strand at 18.033 kb on - strand at 18.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 15,167 + GFF1158 0.23 -0.9 15,167 + GFF1158 0.23 -0.1 15,168 - GFF1158 0.23 -0.7 15,168 - GFF1158 0.23 +0.3 15,168 - GFF1158 0.23 -0.3 15,290 + GFF1158 0.36 +0.7 15,290 + GFF1158 0.36 -0.5 15,291 - GFF1158 0.36 -0.1 15,291 - GFF1158 0.36 -0.6 15,291 - GFF1158 0.36 -0.0 15,389 + GFF1158 0.46 -0.2 15,392 + GFF1158 0.47 -1.0 15,392 + GFF1158 0.47 -0.7 15,392 + GFF1158 0.47 +0.1 15,392 + GFF1158 0.47 -0.3 15,393 - GFF1158 0.47 -0.4 15,393 - GFF1158 0.47 -0.5 15,393 - GFF1158 0.47 -0.4 15,503 + GFF1158 0.58 -0.9 15,504 - GFF1158 0.58 +0.6 15,504 - GFF1158 0.58 -1.6 15,599 + GFF1158 0.68 -1.4 15,599 + GFF1158 0.68 -0.5 15,599 + GFF1158 0.68 -0.4 15,599 + GFF1158 0.68 +0.9 15,600 - GFF1158 0.68 -1.8 15,600 - GFF1158 0.68 -0.2 15,862 - -0.5 15,862 - -1.4 16,350 - GFF1160 0.32 -0.2 16,736 + GFF1160 0.65 -0.1 16,736 + GFF1160 0.65 -1.1 16,805 + GFF1160 0.71 -0.6 16,805 + GFF1160 0.71 -1.0 16,806 - GFF1160 0.72 -0.5 16,980 - GFF1160 0.87 -0.2 16,980 - GFF1160 0.87 -0.1 16,980 - GFF1160 0.87 +0.8 16,980 - GFF1160 0.87 +0.0 16,980 - GFF1160 0.87 +0.6 17,072 + +0.3 17,072 + -0.3 17,072 + +0.1 17,073 - -0.1 17,073 - -0.3 17,465 + GFF1161 0.32 +0.3 17,465 + GFF1161 0.32 +1.3 17,466 - GFF1161 0.32 -0.8 17,483 + GFF1161 0.34 -0.1 17,483 + GFF1161 0.34 +0.8 17,484 - GFF1161 0.34 +0.1 17,507 + GFF1161 0.36 -0.5 17,508 - GFF1161 0.36 +0.6 17,508 - GFF1161 0.36 +0.2 17,508 - GFF1161 0.36 -0.2 17,508 - GFF1161 0.36 +0.2 17,508 - GFF1161 0.36 +0.5 17,508 - GFF1161 0.36 -0.5 17,508 - GFF1161 0.36 -0.1 17,529 - GFF1161 0.38 -1.4 17,582 + GFF1161 0.44 +0.1 17,582 + GFF1161 0.44 +0.4 17,583 - GFF1161 0.44 -0.1 17,583 - GFF1161 0.44 +0.3 17,621 + GFF1161 0.48 -0.7 17,622 - GFF1161 0.48 -0.3 17,622 - GFF1161 0.48 -1.1 17,622 - GFF1161 0.48 -0.9 18,014 + GFF1161 0.89 -0.8 18,014 + GFF1161 0.89 -1.7 18,015 - GFF1161 0.89 +0.3 18,032 + -0.6 18,032 + +0.8 18,032 + -1.3 18,032 + -0.3 18,033 - -0.4 18,033 - +0.1
Or see this region's nucleotide sequence