Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS21325 and COO64_RS21330 are separated by 445 nucleotides COO64_RS21330 and COO64_RS21335 are separated by 352 nucleotides
COO64_RS21325: COO64_RS21325 - flagellin domain-containing protein, at 22,663 to 23,511
_RS21325
COO64_RS21330: COO64_RS21330 - ketoacyl-ACP synthase III, at 23,957 to 24,886
_RS21330
COO64_RS21335: COO64_RS21335 - glycosyltransferase, at 25,239 to 28,025
_RS21335
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 23.017 kb on - strand, within COO64_RS21325 at 23.017 kb on - strand, within COO64_RS21325 at 23.184 kb on + strand, within COO64_RS21325 at 23.184 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.239 kb on - strand, within COO64_RS21325 at 23.298 kb on + strand, within COO64_RS21325 at 23.299 kb on - strand, within COO64_RS21325 at 23.299 kb on - strand, within COO64_RS21325 at 23.299 kb on - strand, within COO64_RS21325 at 23.353 kb on - strand, within COO64_RS21325 at 23.353 kb on - strand, within COO64_RS21325 at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.485 kb on - strand at 23.485 kb on - strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.535 kb on - strand at 23.573 kb on + strand at 23.574 kb on - strand at 23.574 kb on - strand at 23.574 kb on - strand at 23.586 kb on + strand at 23.586 kb on + strand at 23.587 kb on - strand at 23.587 kb on - strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.590 kb on - strand at 23.590 kb on - strand at 23.590 kb on - strand at 23.590 kb on - strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.594 kb on - strand at 23.594 kb on - strand at 23.594 kb on - strand at 23.594 kb on - strand at 23.693 kb on + strand at 23.693 kb on + strand at 23.745 kb on + strand at 23.745 kb on + strand at 23.835 kb on + strand at 23.835 kb on + strand at 23.835 kb on + strand at 23.836 kb on - strand at 23.836 kb on - strand at 23.888 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.955 kb on + strand at 23.955 kb on + strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 24.085 kb on + strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.088 kb on + strand, within COO64_RS21330 at 24.457 kb on - strand, within COO64_RS21330 at 24.457 kb on - strand, within COO64_RS21330 at 24.457 kb on - strand, within COO64_RS21330 at 24.522 kb on + strand, within COO64_RS21330 at 24.523 kb on - strand, within COO64_RS21330 at 24.531 kb on + strand, within COO64_RS21330 at 24.532 kb on - strand, within COO64_RS21330 at 24.532 kb on - strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.831 kb on + strand at 24.831 kb on + strand at 24.831 kb on + strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.996 kb on - strand at 24.996 kb on - strand at 24.996 kb on - strand at 24.996 kb on - strand at 25.000 kb on + strand at 25.000 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.051 kb on + strand at 25.052 kb on - strand at 25.052 kb on - strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.128 kb on - strand at 25.128 kb on - strand at 25.128 kb on - strand at 25.128 kb on - strand at 25.213 kb on + strand at 25.214 kb on - strand at 25.229 kb on + strand at 25.301 kb on + strand at 25.793 kb on - strand, within COO64_RS21335 at 25.793 kb on - strand, within COO64_RS21335
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.5 X remove 23,017 - COO64_RS21325 0.42 +1.0 23,017 - COO64_RS21325 0.42 -0.3 23,184 + COO64_RS21325 0.61 +1.4 23,184 + COO64_RS21325 0.61 +1.2 23,238 + COO64_RS21325 0.68 +1.4 23,238 + COO64_RS21325 0.68 +1.4 23,238 + COO64_RS21325 0.68 -0.1 23,238 + COO64_RS21325 0.68 -0.2 23,239 - COO64_RS21325 0.68 +0.8 23,298 + COO64_RS21325 0.75 +1.2 23,299 - COO64_RS21325 0.75 +0.2 23,299 - COO64_RS21325 0.75 +2.0 23,299 - COO64_RS21325 0.75 +0.8 23,353 - COO64_RS21325 0.81 +0.8 23,353 - COO64_RS21325 0.81 +0.9 23,484 + +1.1 23,484 + +0.9 23,484 + +1.0 23,484 + +1.2 23,484 + +1.1 23,484 + +1.1 23,484 + +0.5 23,484 + +1.0 23,484 + +0.8 23,484 + +0.7 23,484 + +1.2 23,485 - +1.5 23,485 - +0.8 23,490 + +1.3 23,490 + +0.8 23,490 + +0.7 23,490 + +1.7 23,535 - +0.2 23,573 + +1.1 23,574 - -0.3 23,574 - +0.8 23,574 - +0.9 23,586 + +1.2 23,586 + +1.0 23,587 - +0.2 23,587 - +1.2 23,589 + +1.1 23,589 + +1.6 23,589 + +0.8 23,589 + +1.1 23,589 + +1.6 23,590 - +1.1 23,590 - -0.5 23,590 - +1.4 23,590 - +0.7 23,593 + +1.6 23,593 + +1.8 23,593 + +1.0 23,593 + +0.8 23,593 + +1.4 23,593 + +0.5 23,593 + +1.5 23,594 - +1.0 23,594 - +2.3 23,594 - +1.2 23,594 - +1.1 23,693 + -0.9 23,693 + +0.7 23,745 + +0.4 23,745 + +0.1 23,835 + +0.1 23,835 + +0.0 23,835 + -3.5 23,836 - -0.0 23,836 - +0.1 23,888 + -0.5 23,953 + +0.2 23,953 + -0.0 23,953 + -0.3 23,953 + +0.4 23,953 + +0.4 23,953 + -0.2 23,954 - +0.4 23,954 - +0.3 23,954 - +0.1 23,954 - -0.3 23,954 - -0.1 23,954 - -0.4 23,955 + +0.4 23,955 + +0.8 23,956 - -0.5 23,956 - -0.1 23,956 - -0.4 23,956 - +0.7 23,956 - +0.7 23,956 - -0.7 24,085 + COO64_RS21330 0.14 -0.6 24,086 - COO64_RS21330 0.14 -0.4 24,086 - COO64_RS21330 0.14 -0.2 24,086 - COO64_RS21330 0.14 -0.2 24,086 - COO64_RS21330 0.14 -1.3 24,086 - COO64_RS21330 0.14 -0.4 24,088 + COO64_RS21330 0.14 -0.3 24,457 - COO64_RS21330 0.54 +0.2 24,457 - COO64_RS21330 0.54 -0.5 24,457 - COO64_RS21330 0.54 -0.9 24,522 + COO64_RS21330 0.61 -0.1 24,523 - COO64_RS21330 0.61 -0.6 24,531 + COO64_RS21330 0.62 +0.6 24,532 - COO64_RS21330 0.62 -0.2 24,532 - COO64_RS21330 0.62 -0.2 24,537 + COO64_RS21330 0.62 -1.3 24,537 + COO64_RS21330 0.62 -1.2 24,537 + COO64_RS21330 0.62 -0.0 24,537 + COO64_RS21330 0.62 -0.7 24,559 + COO64_RS21330 0.65 -1.8 24,559 + COO64_RS21330 0.65 -0.0 24,559 + COO64_RS21330 0.65 -1.3 24,559 + COO64_RS21330 0.65 -0.9 24,559 + COO64_RS21330 0.65 -0.1 24,831 + -0.3 24,831 + -0.5 24,831 + +0.2 24,832 - -0.4 24,832 - +0.2 24,832 - +0.7 24,832 - -0.5 24,832 - +1.5 24,832 - -0.2 24,855 - +2.4 24,855 - +0.1 24,855 - +0.3 24,855 - -0.5 24,855 - +1.0 24,855 - -1.3 24,858 + -0.6 24,858 + -0.3 24,858 + -0.3 24,858 + -0.1 24,858 + -0.7 24,859 - -1.1 24,859 - -0.5 24,859 - -0.5 24,859 - +0.2 24,859 - -0.4 24,859 - +0.6 24,904 + +1.4 24,904 + -0.3 24,904 + +0.2 24,904 + +0.1 24,904 + -0.4 24,904 + -0.7 24,995 + -0.3 24,995 + -0.0 24,995 + -0.5 24,995 + +0.6 24,995 + -0.2 24,996 - -0.5 24,996 - -0.3 24,996 - +1.1 24,996 - -0.7 25,000 + -0.5 25,000 + -0.2 25,044 + +0.0 25,044 + +0.8 25,044 + -0.1 25,044 + -0.6 25,044 + -0.2 25,051 + -0.1 25,052 - -0.2 25,052 - -0.8 25,127 + +2.1 25,127 + +0.1 25,127 + +0.7 25,127 + +0.1 25,127 + -0.8 25,128 - +0.5 25,128 - +1.0 25,128 - -1.5 25,128 - -0.5 25,213 + +0.1 25,214 - +0.4 25,229 + -0.1 25,301 + -0.5 25,793 - COO64_RS21335 0.20 +1.3 25,793 - COO64_RS21335 0.20 -0.4
Or see this region's nucleotide sequence