Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03749 and BACOVA_03750 are separated by 29 nucleotides BACOVA_03750 and BACOVA_03751 are separated by 55 nucleotides BACOVA_03751 and BACOVA_03752 are separated by 8 nucleotides
BACOVA_03749: BACOVA_03749 - hypothetical protein, at 79,199 to 80,212
_03749
BACOVA_03750: BACOVA_03750 - phosphate-selective porin O and P, at 80,242 to 81,612
_03750
BACOVA_03751: BACOVA_03751 - hypothetical protein, at 81,668 to 81,775
_03751
BACOVA_03752: BACOVA_03752 - carbamoyl-phosphate synthase, large subunit, at 81,784 to 85,011
_03752
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.268 kb on - strand at 79.269 kb on + strand at 79.270 kb on - strand at 79.326 kb on + strand, within BACOVA_03749 at 79.331 kb on - strand, within BACOVA_03749 at 79.375 kb on + strand, within BACOVA_03749 at 79.375 kb on + strand, within BACOVA_03749 at 79.376 kb on - strand, within BACOVA_03749 at 79.379 kb on + strand, within BACOVA_03749 at 79.451 kb on - strand, within BACOVA_03749 at 79.459 kb on + strand, within BACOVA_03749 at 79.508 kb on + strand, within BACOVA_03749 at 79.513 kb on + strand, within BACOVA_03749 at 79.529 kb on + strand, within BACOVA_03749 at 79.530 kb on - strand, within BACOVA_03749 at 79.530 kb on - strand, within BACOVA_03749 at 79.531 kb on + strand, within BACOVA_03749 at 79.531 kb on + strand, within BACOVA_03749 at 79.533 kb on + strand, within BACOVA_03749 at 79.533 kb on + strand, within BACOVA_03749 at 79.577 kb on - strand, within BACOVA_03749 at 79.598 kb on - strand, within BACOVA_03749 at 79.601 kb on - strand, within BACOVA_03749 at 79.602 kb on + strand, within BACOVA_03749 at 79.602 kb on + strand, within BACOVA_03749 at 79.603 kb on - strand, within BACOVA_03749 at 79.659 kb on + strand, within BACOVA_03749 at 79.660 kb on - strand, within BACOVA_03749 at 79.660 kb on - strand, within BACOVA_03749 at 79.667 kb on - strand, within BACOVA_03749 at 79.697 kb on - strand, within BACOVA_03749 at 79.711 kb on + strand, within BACOVA_03749 at 79.711 kb on + strand, within BACOVA_03749 at 79.714 kb on + strand, within BACOVA_03749 at 79.786 kb on + strand, within BACOVA_03749 at 79.892 kb on - strand, within BACOVA_03749 at 79.959 kb on + strand, within BACOVA_03749 at 79.963 kb on + strand, within BACOVA_03749 at 80.003 kb on - strand, within BACOVA_03749 at 80.017 kb on + strand, within BACOVA_03749 at 80.018 kb on - strand, within BACOVA_03749 at 80.026 kb on + strand, within BACOVA_03749 at 80.027 kb on - strand, within BACOVA_03749 at 80.035 kb on + strand, within BACOVA_03749 at 80.068 kb on + strand, within BACOVA_03749 at 80.119 kb on + strand at 80.120 kb on - strand at 80.120 kb on - strand at 80.153 kb on - strand at 80.153 kb on - strand at 80.207 kb on - strand at 80.227 kb on + strand at 80.259 kb on + strand at 80.260 kb on - strand at 80.273 kb on - strand at 80.299 kb on + strand at 80.308 kb on + strand at 80.316 kb on + strand at 80.317 kb on - strand at 80.355 kb on + strand at 80.361 kb on + strand at 80.369 kb on + strand at 80.370 kb on - strand at 80.376 kb on - strand at 80.376 kb on - strand at 80.409 kb on - strand, within BACOVA_03750 at 80.453 kb on - strand, within BACOVA_03750 at 80.454 kb on + strand, within BACOVA_03750 at 80.455 kb on - strand, within BACOVA_03750 at 80.456 kb on + strand, within BACOVA_03750 at 80.457 kb on - strand, within BACOVA_03750 at 80.457 kb on - strand, within BACOVA_03750 at 80.485 kb on - strand, within BACOVA_03750 at 80.488 kb on + strand, within BACOVA_03750 at 80.489 kb on - strand, within BACOVA_03750 at 80.489 kb on - strand, within BACOVA_03750 at 80.493 kb on + strand, within BACOVA_03750 at 80.529 kb on + strand, within BACOVA_03750 at 80.573 kb on + strand, within BACOVA_03750 at 80.573 kb on + strand, within BACOVA_03750 at 80.611 kb on - strand, within BACOVA_03750 at 80.615 kb on + strand, within BACOVA_03750 at 80.626 kb on - strand, within BACOVA_03750 at 80.629 kb on + strand, within BACOVA_03750 at 80.661 kb on + strand, within BACOVA_03750 at 80.662 kb on - strand, within BACOVA_03750 at 80.669 kb on + strand, within BACOVA_03750 at 80.670 kb on - strand, within BACOVA_03750 at 80.670 kb on - strand, within BACOVA_03750 at 80.674 kb on - strand, within BACOVA_03750 at 80.691 kb on + strand, within BACOVA_03750 at 80.691 kb on + strand, within BACOVA_03750 at 80.698 kb on - strand, within BACOVA_03750 at 80.699 kb on + strand, within BACOVA_03750 at 80.709 kb on - strand, within BACOVA_03750 at 80.751 kb on + strand, within BACOVA_03750 at 80.751 kb on + strand, within BACOVA_03750 at 80.754 kb on + strand, within BACOVA_03750 at 80.756 kb on + strand, within BACOVA_03750 at 80.880 kb on + strand, within BACOVA_03750 at 80.881 kb on - strand, within BACOVA_03750 at 80.885 kb on + strand, within BACOVA_03750 at 80.918 kb on + strand, within BACOVA_03750 at 80.923 kb on - strand, within BACOVA_03750 at 80.935 kb on + strand, within BACOVA_03750 at 80.989 kb on - strand, within BACOVA_03750 at 81.200 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.213 kb on + strand, within BACOVA_03750 at 81.214 kb on - strand, within BACOVA_03750 at 81.220 kb on + strand, within BACOVA_03750 at 81.313 kb on - strand, within BACOVA_03750 at 81.425 kb on + strand, within BACOVA_03750 at 81.446 kb on - strand, within BACOVA_03750 at 81.516 kb on + strand at 81.516 kb on + strand at 81.517 kb on - strand at 81.559 kb on + strand at 81.559 kb on + strand at 81.660 kb on - strand at 81.678 kb on + strand at 81.682 kb on - strand, within BACOVA_03751 at 81.689 kb on + strand, within BACOVA_03751 at 81.729 kb on + strand, within BACOVA_03751 at 81.785 kb on + strand at 81.792 kb on - strand at 81.811 kb on - strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.817 kb on - strand at 81.835 kb on - strand at 81.876 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.927 kb on + strand at 81.928 kb on - strand at 81.931 kb on + strand at 81.932 kb on - strand at 81.968 kb on - strand at 82.035 kb on - strand at 82.080 kb on + strand at 82.179 kb on + strand, within BACOVA_03752 at 82.194 kb on + strand, within BACOVA_03752 at 82.239 kb on + strand, within BACOVA_03752 at 82.279 kb on - strand, within BACOVA_03752 at 82.349 kb on + strand, within BACOVA_03752 at 82.480 kb on - strand, within BACOVA_03752 at 82.498 kb on - strand, within BACOVA_03752 at 82.554 kb on + strand, within BACOVA_03752 at 82.572 kb on + strand, within BACOVA_03752 at 82.597 kb on + strand, within BACOVA_03752
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C) remove 79,268 - +1.1 79,269 + +0.5 79,270 - +1.0 79,326 + BACOVA_03749 0.13 +0.0 79,331 - BACOVA_03749 0.13 -1.2 79,375 + BACOVA_03749 0.17 +0.7 79,375 + BACOVA_03749 0.17 +0.5 79,376 - BACOVA_03749 0.17 -0.9 79,379 + BACOVA_03749 0.18 +0.2 79,451 - BACOVA_03749 0.25 -0.6 79,459 + BACOVA_03749 0.26 -0.6 79,508 + BACOVA_03749 0.30 -0.3 79,513 + BACOVA_03749 0.31 +0.3 79,529 + BACOVA_03749 0.33 +0.0 79,530 - BACOVA_03749 0.33 +0.3 79,530 - BACOVA_03749 0.33 +0.2 79,531 + BACOVA_03749 0.33 -0.3 79,531 + BACOVA_03749 0.33 -0.4 79,533 + BACOVA_03749 0.33 +0.0 79,533 + BACOVA_03749 0.33 -0.8 79,577 - BACOVA_03749 0.37 +0.5 79,598 - BACOVA_03749 0.39 -0.9 79,601 - BACOVA_03749 0.40 -1.4 79,602 + BACOVA_03749 0.40 -0.7 79,602 + BACOVA_03749 0.40 -0.3 79,603 - BACOVA_03749 0.40 +0.1 79,659 + BACOVA_03749 0.45 +0.3 79,660 - BACOVA_03749 0.45 +0.0 79,660 - BACOVA_03749 0.45 +0.7 79,667 - BACOVA_03749 0.46 -0.2 79,697 - BACOVA_03749 0.49 -0.5 79,711 + BACOVA_03749 0.50 -0.5 79,711 + BACOVA_03749 0.50 +1.1 79,714 + BACOVA_03749 0.51 +0.5 79,786 + BACOVA_03749 0.58 -2.6 79,892 - BACOVA_03749 0.68 +0.6 79,959 + BACOVA_03749 0.75 -0.4 79,963 + BACOVA_03749 0.75 +1.3 80,003 - BACOVA_03749 0.79 -0.3 80,017 + BACOVA_03749 0.81 -0.0 80,018 - BACOVA_03749 0.81 -1.4 80,026 + BACOVA_03749 0.82 +1.2 80,027 - BACOVA_03749 0.82 +0.1 80,035 + BACOVA_03749 0.82 +1.5 80,068 + BACOVA_03749 0.86 -0.4 80,119 + -0.6 80,120 - -0.6 80,120 - +0.5 80,153 - -0.6 80,153 - -0.2 80,207 - -0.4 80,227 + +0.4 80,259 + -1.0 80,260 - -0.2 80,273 - -0.4 80,299 + +0.1 80,308 + +1.0 80,316 + -0.2 80,317 - +0.6 80,355 + +2.0 80,361 + -0.3 80,369 + -0.6 80,370 - -1.0 80,376 - -0.0 80,376 - -1.0 80,409 - BACOVA_03750 0.12 -0.7 80,453 - BACOVA_03750 0.15 +1.5 80,454 + BACOVA_03750 0.15 -0.1 80,455 - BACOVA_03750 0.16 -1.4 80,456 + BACOVA_03750 0.16 +0.2 80,457 - BACOVA_03750 0.16 +0.6 80,457 - BACOVA_03750 0.16 +1.4 80,485 - BACOVA_03750 0.18 -0.2 80,488 + BACOVA_03750 0.18 +1.0 80,489 - BACOVA_03750 0.18 -0.2 80,489 - BACOVA_03750 0.18 -0.5 80,493 + BACOVA_03750 0.18 -0.3 80,529 + BACOVA_03750 0.21 +0.1 80,573 + BACOVA_03750 0.24 +0.1 80,573 + BACOVA_03750 0.24 -1.2 80,611 - BACOVA_03750 0.27 +1.5 80,615 + BACOVA_03750 0.27 +1.6 80,626 - BACOVA_03750 0.28 -1.9 80,629 + BACOVA_03750 0.28 +0.6 80,661 + BACOVA_03750 0.31 -0.3 80,662 - BACOVA_03750 0.31 -0.5 80,669 + BACOVA_03750 0.31 -0.0 80,670 - BACOVA_03750 0.31 -0.2 80,670 - BACOVA_03750 0.31 +0.6 80,674 - BACOVA_03750 0.32 -0.1 80,691 + BACOVA_03750 0.33 +0.6 80,691 + BACOVA_03750 0.33 +0.3 80,698 - BACOVA_03750 0.33 -0.1 80,699 + BACOVA_03750 0.33 -0.9 80,709 - BACOVA_03750 0.34 -1.2 80,751 + BACOVA_03750 0.37 +0.3 80,751 + BACOVA_03750 0.37 -0.9 80,754 + BACOVA_03750 0.37 +1.0 80,756 + BACOVA_03750 0.37 -1.2 80,880 + BACOVA_03750 0.47 -1.5 80,881 - BACOVA_03750 0.47 -1.3 80,885 + BACOVA_03750 0.47 -0.5 80,918 + BACOVA_03750 0.49 +0.4 80,923 - BACOVA_03750 0.50 +0.9 80,935 + BACOVA_03750 0.51 +0.3 80,989 - BACOVA_03750 0.54 +0.4 81,200 + BACOVA_03750 0.70 -0.4 81,209 + BACOVA_03750 0.71 +0.0 81,209 + BACOVA_03750 0.71 +1.1 81,213 + BACOVA_03750 0.71 +1.1 81,214 - BACOVA_03750 0.71 -0.0 81,220 + BACOVA_03750 0.71 +0.1 81,313 - BACOVA_03750 0.78 +0.8 81,425 + BACOVA_03750 0.86 +0.3 81,446 - BACOVA_03750 0.88 -1.4 81,516 + +1.1 81,516 + -0.0 81,517 - +0.2 81,559 + -0.3 81,559 + -0.0 81,660 - -0.3 81,678 + +0.4 81,682 - BACOVA_03751 0.13 -0.8 81,689 + BACOVA_03751 0.19 -0.9 81,729 + BACOVA_03751 0.56 -2.0 81,785 + +1.1 81,792 - -0.1 81,811 - -3.3 81,814 + -1.0 81,814 + -0.4 81,814 + +0.5 81,814 + -0.2 81,815 - -0.0 81,815 - +0.1 81,815 - -0.2 81,816 + +1.0 81,816 + -0.1 81,817 - +0.5 81,835 - +0.4 81,876 + +0.4 81,888 + -0.5 81,888 + -0.6 81,888 + +0.9 81,927 + -1.0 81,928 - -0.5 81,931 + +0.3 81,932 - -0.2 81,968 - -0.5 82,035 - -0.3 82,080 + -1.5 82,179 + BACOVA_03752 0.12 -0.7 82,194 + BACOVA_03752 0.13 -0.1 82,239 + BACOVA_03752 0.14 +0.2 82,279 - BACOVA_03752 0.15 -0.7 82,349 + BACOVA_03752 0.18 +0.5 82,480 - BACOVA_03752 0.22 +0.1 82,498 - BACOVA_03752 0.22 +0.1 82,554 + BACOVA_03752 0.24 +0.4 82,572 + BACOVA_03752 0.24 -0.5 82,597 + BACOVA_03752 0.25 +0.2
Or see this region's nucleotide sequence