Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03454

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03452 and BACOVA_03453 are separated by 31 nucleotidesBACOVA_03453 and BACOVA_03454 overlap by 4 nucleotidesBACOVA_03454 and BACOVA_03455 are separated by 38 nucleotides BACOVA_03452: BACOVA_03452 - N-acetylmuramic acid 6-phosphate etherase, at 194,381 to 195,196 _03452 BACOVA_03453: BACOVA_03453 - hypothetical protein, at 195,228 to 196,079 _03453 BACOVA_03454: BACOVA_03454 - hypothetical protein, at 196,076 to 197,191 _03454 BACOVA_03455: BACOVA_03455 - hypothetical protein, at 197,230 to 198,513 _03455 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 195.089 kb on + strand, within BACOVA_03452at 195.102 kb on - strand, within BACOVA_03452at 195.102 kb on - strand, within BACOVA_03452at 195.131 kb on + strandat 195.197 kb on - strandat 195.251 kb on + strandat 195.251 kb on + strandat 195.258 kb on + strandat 195.331 kb on - strand, within BACOVA_03453at 195.333 kb on + strand, within BACOVA_03453at 195.372 kb on + strand, within BACOVA_03453at 195.379 kb on + strand, within BACOVA_03453at 195.380 kb on - strand, within BACOVA_03453at 195.394 kb on + strand, within BACOVA_03453at 195.402 kb on + strand, within BACOVA_03453at 195.479 kb on + strand, within BACOVA_03453at 195.480 kb on - strand, within BACOVA_03453at 195.480 kb on - strand, within BACOVA_03453at 195.712 kb on + strand, within BACOVA_03453at 196.061 kb on + strandat 196.075 kb on - strandat 196.079 kb on + strandat 196.080 kb on - strandat 196.085 kb on - strandat 196.109 kb on + strandat 196.109 kb on + strandat 196.109 kb on + strandat 196.110 kb on - strandat 196.110 kb on - strandat 196.111 kb on + strandat 196.112 kb on - strandat 196.113 kb on + strandat 196.114 kb on - strandat 196.114 kb on - strandat 196.129 kb on + strandat 196.129 kb on + strandat 196.130 kb on - strandat 196.147 kb on + strandat 196.153 kb on - strandat 196.153 kb on - strandat 196.239 kb on + strand, within BACOVA_03454at 196.253 kb on - strand, within BACOVA_03454at 196.287 kb on - strand, within BACOVA_03454at 196.291 kb on - strand, within BACOVA_03454at 196.295 kb on - strand, within BACOVA_03454at 196.343 kb on - strand, within BACOVA_03454at 196.374 kb on - strand, within BACOVA_03454at 196.379 kb on + strand, within BACOVA_03454at 196.379 kb on + strand, within BACOVA_03454at 196.379 kb on + strand, within BACOVA_03454at 196.380 kb on - strand, within BACOVA_03454at 196.383 kb on - strand, within BACOVA_03454at 196.455 kb on + strand, within BACOVA_03454at 196.456 kb on - strand, within BACOVA_03454at 196.456 kb on - strand, within BACOVA_03454at 196.459 kb on + strand, within BACOVA_03454at 196.582 kb on + strand, within BACOVA_03454at 196.592 kb on - strand, within BACOVA_03454at 196.598 kb on - strand, within BACOVA_03454at 196.636 kb on + strand, within BACOVA_03454at 196.636 kb on + strand, within BACOVA_03454at 196.636 kb on + strand, within BACOVA_03454at 196.637 kb on - strand, within BACOVA_03454at 196.637 kb on - strand, within BACOVA_03454at 196.637 kb on - strand, within BACOVA_03454at 196.678 kb on + strand, within BACOVA_03454at 196.678 kb on + strand, within BACOVA_03454at 196.692 kb on + strand, within BACOVA_03454at 196.721 kb on - strand, within BACOVA_03454at 196.733 kb on + strand, within BACOVA_03454at 196.735 kb on - strand, within BACOVA_03454at 196.736 kb on + strand, within BACOVA_03454at 196.737 kb on - strand, within BACOVA_03454at 196.740 kb on - strand, within BACOVA_03454at 196.743 kb on - strand, within BACOVA_03454at 196.760 kb on + strand, within BACOVA_03454at 196.763 kb on - strand, within BACOVA_03454at 196.763 kb on - strand, within BACOVA_03454at 196.764 kb on + strand, within BACOVA_03454at 196.764 kb on + strand, within BACOVA_03454at 196.765 kb on - strand, within BACOVA_03454at 196.765 kb on - strand, within BACOVA_03454at 196.806 kb on + strand, within BACOVA_03454at 196.876 kb on - strand, within BACOVA_03454at 196.921 kb on + strand, within BACOVA_03454at 196.922 kb on - strand, within BACOVA_03454at 196.961 kb on - strand, within BACOVA_03454at 196.969 kb on + strand, within BACOVA_03454at 196.970 kb on - strand, within BACOVA_03454at 196.977 kb on + strand, within BACOVA_03454at 196.984 kb on + strand, within BACOVA_03454at 196.995 kb on + strand, within BACOVA_03454at 196.996 kb on - strand, within BACOVA_03454at 197.036 kb on + strand, within BACOVA_03454at 197.051 kb on - strand, within BACOVA_03454at 197.085 kb on + strandat 197.085 kb on + strandat 197.086 kb on - strandat 197.111 kb on - strandat 197.137 kb on + strandat 197.138 kb on - strandat 197.151 kb on - strandat 197.177 kb on - strandat 197.185 kb on + strandat 197.186 kb on - strandat 197.218 kb on + strandat 197.222 kb on - strandat 197.307 kb on + strandat 197.307 kb on + strandat 197.308 kb on - strandat 197.382 kb on + strand, within BACOVA_03455at 197.382 kb on + strand, within BACOVA_03455at 197.382 kb on + strand, within BACOVA_03455at 197.383 kb on - strand, within BACOVA_03455at 197.383 kb on - strand, within BACOVA_03455at 197.394 kb on + strand, within BACOVA_03455at 197.415 kb on - strand, within BACOVA_03455at 197.456 kb on + strand, within BACOVA_03455at 197.458 kb on + strand, within BACOVA_03455at 197.458 kb on + strand, within BACOVA_03455at 197.463 kb on + strand, within BACOVA_03455at 197.464 kb on - strand, within BACOVA_03455at 197.464 kb on - strand, within BACOVA_03455at 197.464 kb on - strand, within BACOVA_03455at 197.465 kb on + strand, within BACOVA_03455at 197.465 kb on + strand, within BACOVA_03455at 197.472 kb on + strand, within BACOVA_03455at 197.520 kb on + strand, within BACOVA_03455at 197.521 kb on - strand, within BACOVA_03455at 197.524 kb on + strand, within BACOVA_03455at 197.527 kb on - strand, within BACOVA_03455at 197.557 kb on + strand, within BACOVA_03455at 197.557 kb on + strand, within BACOVA_03455at 197.557 kb on + strand, within BACOVA_03455at 197.558 kb on - strand, within BACOVA_03455at 197.558 kb on - strand, within BACOVA_03455at 197.561 kb on + strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.562 kb on - strand, within BACOVA_03455at 197.563 kb on + strand, within BACOVA_03455at 197.563 kb on + strand, within BACOVA_03455at 197.564 kb on - strand, within BACOVA_03455at 197.564 kb on - strand, within BACOVA_03455at 197.599 kb on + strand, within BACOVA_03455at 197.600 kb on - strand, within BACOVA_03455at 197.663 kb on - strand, within BACOVA_03455at 197.669 kb on - strand, within BACOVA_03455at 197.678 kb on - strand, within BACOVA_03455at 197.678 kb on - strand, within BACOVA_03455at 197.679 kb on + strand, within BACOVA_03455at 197.679 kb on + strand, within BACOVA_03455at 197.680 kb on - strand, within BACOVA_03455at 197.680 kb on - strand, within BACOVA_03455at 197.720 kb on - strand, within BACOVA_03455at 197.731 kb on - strand, within BACOVA_03455at 197.761 kb on + strand, within BACOVA_03455at 197.761 kb on + strand, within BACOVA_03455at 197.761 kb on + strand, within BACOVA_03455at 197.902 kb on - strand, within BACOVA_03455at 197.940 kb on - strand, within BACOVA_03455at 197.944 kb on - strand, within BACOVA_03455at 197.947 kb on - strand, within BACOVA_03455at 197.975 kb on + strand, within BACOVA_03455at 197.976 kb on - strand, within BACOVA_03455at 197.976 kb on - strand, within BACOVA_03455at 197.982 kb on + strand, within BACOVA_03455at 197.983 kb on - strand, within BACOVA_03455at 198.077 kb on + strand, within BACOVA_03455at 198.084 kb on + strand, within BACOVA_03455at 198.085 kb on - strand, within BACOVA_03455at 198.085 kb on - strand, within BACOVA_03455at 198.118 kb on - strand, within BACOVA_03455at 198.138 kb on - strand, within BACOVA_03455at 198.165 kb on + strand, within BACOVA_03455

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
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195,089 + BACOVA_03452 0.87 -0.1
195,102 - BACOVA_03452 0.88 -0.8
195,102 - BACOVA_03452 0.88 -1.3
195,131 + +0.6
195,197 - -0.1
195,251 + -0.7
195,251 + +0.6
195,258 + +1.7
195,331 - BACOVA_03453 0.12 +1.3
195,333 + BACOVA_03453 0.12 -0.8
195,372 + BACOVA_03453 0.17 +0.3
195,379 + BACOVA_03453 0.18 +1.1
195,380 - BACOVA_03453 0.18 +0.2
195,394 + BACOVA_03453 0.19 +0.6
195,402 + BACOVA_03453 0.20 -1.0
195,479 + BACOVA_03453 0.29 +1.4
195,480 - BACOVA_03453 0.30 -0.8
195,480 - BACOVA_03453 0.30 -0.2
195,712 + BACOVA_03453 0.57 +0.2
196,061 + +0.1
196,075 - +0.1
196,079 + +0.4
196,080 - -0.9
196,085 - +1.4
196,109 + -0.3
196,109 + +0.4
196,109 + +0.8
196,110 - -0.5
196,110 - -0.3
196,111 + +1.0
196,112 - -0.1
196,113 + -0.7
196,114 - -0.1
196,114 - +0.0
196,129 + +0.7
196,129 + -0.0
196,130 - +0.2
196,147 + -0.4
196,153 - -0.3
196,153 - +0.3
196,239 + BACOVA_03454 0.15 +0.4
196,253 - BACOVA_03454 0.16 +0.6
196,287 - BACOVA_03454 0.19 -0.2
196,291 - BACOVA_03454 0.19 +0.1
196,295 - BACOVA_03454 0.20 +0.9
196,343 - BACOVA_03454 0.24 +1.3
196,374 - BACOVA_03454 0.27 -0.3
196,379 + BACOVA_03454 0.27 +1.7
196,379 + BACOVA_03454 0.27 +0.6
196,379 + BACOVA_03454 0.27 -0.1
196,380 - BACOVA_03454 0.27 -0.0
196,383 - BACOVA_03454 0.28 +0.2
196,455 + BACOVA_03454 0.34 +0.0
196,456 - BACOVA_03454 0.34 +0.6
196,456 - BACOVA_03454 0.34 -1.1
196,459 + BACOVA_03454 0.34 -0.5
196,582 + BACOVA_03454 0.45 +0.5
196,592 - BACOVA_03454 0.46 -1.1
196,598 - BACOVA_03454 0.47 +0.2
196,636 + BACOVA_03454 0.50 +0.2
196,636 + BACOVA_03454 0.50 +0.5
196,636 + BACOVA_03454 0.50 -0.4
196,637 - BACOVA_03454 0.50 -0.3
196,637 - BACOVA_03454 0.50 -0.3
196,637 - BACOVA_03454 0.50 -0.1
196,678 + BACOVA_03454 0.54 +0.4
196,678 + BACOVA_03454 0.54 -0.2
196,692 + BACOVA_03454 0.55 +0.2
196,721 - BACOVA_03454 0.58 +0.9
196,733 + BACOVA_03454 0.59 +0.8
196,735 - BACOVA_03454 0.59 +0.6
196,736 + BACOVA_03454 0.59 -0.1
196,737 - BACOVA_03454 0.59 -1.2
196,740 - BACOVA_03454 0.59 -1.6
196,743 - BACOVA_03454 0.60 -0.2
196,760 + BACOVA_03454 0.61 -0.4
196,763 - BACOVA_03454 0.62 +0.0
196,763 - BACOVA_03454 0.62 -0.0
196,764 + BACOVA_03454 0.62 +0.3
196,764 + BACOVA_03454 0.62 +0.7
196,765 - BACOVA_03454 0.62 +0.1
196,765 - BACOVA_03454 0.62 +0.4
196,806 + BACOVA_03454 0.65 -0.3
196,876 - BACOVA_03454 0.72 -0.8
196,921 + BACOVA_03454 0.76 +0.4
196,922 - BACOVA_03454 0.76 +0.2
196,961 - BACOVA_03454 0.79 -0.4
196,969 + BACOVA_03454 0.80 -1.0
196,970 - BACOVA_03454 0.80 -0.4
196,977 + BACOVA_03454 0.81 +0.0
196,984 + BACOVA_03454 0.81 -0.1
196,995 + BACOVA_03454 0.82 -0.7
196,996 - BACOVA_03454 0.82 +0.1
197,036 + BACOVA_03454 0.86 +0.6
197,051 - BACOVA_03454 0.87 +0.3
197,085 + -1.0
197,085 + +0.3
197,086 - -0.4
197,111 - +1.0
197,137 + +0.6
197,138 - -0.4
197,151 - -0.5
197,177 - -0.4
197,185 + +1.2
197,186 - +0.8
197,218 + +0.6
197,222 - +0.5
197,307 + +0.1
197,307 + +0.4
197,308 - -0.4
197,382 + BACOVA_03455 0.12 +0.5
197,382 + BACOVA_03455 0.12 -0.1
197,382 + BACOVA_03455 0.12 +1.9
197,383 - BACOVA_03455 0.12 +0.7
197,383 - BACOVA_03455 0.12 -0.7
197,394 + BACOVA_03455 0.13 -0.2
197,415 - BACOVA_03455 0.14 -0.3
197,456 + BACOVA_03455 0.18 +0.3
197,458 + BACOVA_03455 0.18 +0.3
197,458 + BACOVA_03455 0.18 -0.2
197,463 + BACOVA_03455 0.18 +1.0
197,464 - BACOVA_03455 0.18 -0.1
197,464 - BACOVA_03455 0.18 +0.4
197,464 - BACOVA_03455 0.18 +0.5
197,465 + BACOVA_03455 0.18 -0.8
197,465 + BACOVA_03455 0.18 -0.4
197,472 + BACOVA_03455 0.19 -0.8
197,520 + BACOVA_03455 0.23 +0.0
197,521 - BACOVA_03455 0.23 -0.0
197,524 + BACOVA_03455 0.23 -1.9
197,527 - BACOVA_03455 0.23 -0.6
197,557 + BACOVA_03455 0.25 +0.0
197,557 + BACOVA_03455 0.25 -0.1
197,557 + BACOVA_03455 0.25 +0.7
197,558 - BACOVA_03455 0.26 +0.3
197,558 - BACOVA_03455 0.26 +0.4
197,561 + BACOVA_03455 0.26 +0.7
197,562 - BACOVA_03455 0.26 +1.0
197,562 - BACOVA_03455 0.26 -1.7
197,562 - BACOVA_03455 0.26 -0.1
197,562 - BACOVA_03455 0.26 -0.4
197,563 + BACOVA_03455 0.26 +2.0
197,563 + BACOVA_03455 0.26 -1.5
197,564 - BACOVA_03455 0.26 +0.0
197,564 - BACOVA_03455 0.26 -0.8
197,599 + BACOVA_03455 0.29 +1.5
197,600 - BACOVA_03455 0.29 +1.7
197,663 - BACOVA_03455 0.34 +1.3
197,669 - BACOVA_03455 0.34 +0.5
197,678 - BACOVA_03455 0.35 +0.3
197,678 - BACOVA_03455 0.35 -0.0
197,679 + BACOVA_03455 0.35 +0.7
197,679 + BACOVA_03455 0.35 +0.2
197,680 - BACOVA_03455 0.35 +0.7
197,680 - BACOVA_03455 0.35 -1.4
197,720 - BACOVA_03455 0.38 +2.2
197,731 - BACOVA_03455 0.39 +0.6
197,761 + BACOVA_03455 0.41 -0.1
197,761 + BACOVA_03455 0.41 -1.0
197,761 + BACOVA_03455 0.41 +0.3
197,902 - BACOVA_03455 0.52 -0.4
197,940 - BACOVA_03455 0.55 +0.1
197,944 - BACOVA_03455 0.56 -0.2
197,947 - BACOVA_03455 0.56 +1.7
197,975 + BACOVA_03455 0.58 +1.0
197,976 - BACOVA_03455 0.58 +0.3
197,976 - BACOVA_03455 0.58 -0.6
197,982 + BACOVA_03455 0.59 +0.1
197,983 - BACOVA_03455 0.59 +0.1
198,077 + BACOVA_03455 0.66 -0.4
198,084 + BACOVA_03455 0.67 +0.3
198,085 - BACOVA_03455 0.67 -1.3
198,085 - BACOVA_03455 0.67 -0.4
198,118 - BACOVA_03455 0.69 +0.2
198,138 - BACOVA_03455 0.71 -0.6
198,165 + BACOVA_03455 0.73 +0.1

Or see this region's nucleotide sequence