Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03141

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03140 and BACOVA_03141 are separated by 11 nucleotidesBACOVA_03141 and BACOVA_03142 are separated by 172 nucleotides BACOVA_03140: BACOVA_03140 - hypothetical protein, at 231,524 to 232,795 _03140 BACOVA_03141: BACOVA_03141 - ATPase family associated with various cellular activities (AAA), at 232,807 to 233,781 _03141 BACOVA_03142: BACOVA_03142 - hypothetical protein, at 233,954 to 235,264 _03142 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 231.886 kb on + strand, within BACOVA_03140at 231.887 kb on - strand, within BACOVA_03140at 231.905 kb on + strand, within BACOVA_03140at 231.909 kb on - strand, within BACOVA_03140at 231.981 kb on + strand, within BACOVA_03140at 232.043 kb on + strand, within BACOVA_03140at 232.044 kb on - strand, within BACOVA_03140at 232.144 kb on + strand, within BACOVA_03140at 232.154 kb on + strand, within BACOVA_03140at 232.155 kb on - strand, within BACOVA_03140at 232.156 kb on + strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.164 kb on + strand, within BACOVA_03140at 232.199 kb on - strand, within BACOVA_03140at 232.262 kb on + strand, within BACOVA_03140at 232.262 kb on + strand, within BACOVA_03140at 232.263 kb on - strand, within BACOVA_03140at 232.263 kb on - strand, within BACOVA_03140at 232.265 kb on - strand, within BACOVA_03140at 232.301 kb on - strand, within BACOVA_03140at 232.319 kb on + strand, within BACOVA_03140at 232.411 kb on + strand, within BACOVA_03140at 232.427 kb on - strand, within BACOVA_03140at 232.517 kb on - strand, within BACOVA_03140at 232.517 kb on - strand, within BACOVA_03140at 232.572 kb on - strand, within BACOVA_03140at 232.575 kb on + strand, within BACOVA_03140at 232.575 kb on + strand, within BACOVA_03140at 232.757 kb on + strandat 232.757 kb on + strandat 232.757 kb on + strandat 232.758 kb on - strandat 232.759 kb on + strandat 232.760 kb on - strandat 232.766 kb on - strandat 232.780 kb on - strandat 232.780 kb on - strandat 232.790 kb on - strandat 232.838 kb on + strandat 232.839 kb on - strandat 232.839 kb on - strandat 232.860 kb on - strandat 232.892 kb on + strandat 232.893 kb on - strandat 232.922 kb on + strand, within BACOVA_03141at 232.952 kb on + strand, within BACOVA_03141at 232.959 kb on - strand, within BACOVA_03141at 232.959 kb on - strand, within BACOVA_03141at 232.959 kb on - strand, within BACOVA_03141at 233.054 kb on + strand, within BACOVA_03141at 233.069 kb on + strand, within BACOVA_03141at 233.070 kb on - strand, within BACOVA_03141at 233.073 kb on - strand, within BACOVA_03141at 233.088 kb on + strand, within BACOVA_03141at 233.091 kb on + strand, within BACOVA_03141at 233.140 kb on - strand, within BACOVA_03141at 233.224 kb on - strand, within BACOVA_03141at 233.303 kb on - strand, within BACOVA_03141at 233.346 kb on - strand, within BACOVA_03141at 233.400 kb on + strand, within BACOVA_03141at 233.401 kb on - strand, within BACOVA_03141at 233.401 kb on - strand, within BACOVA_03141at 233.433 kb on + strand, within BACOVA_03141at 233.478 kb on + strand, within BACOVA_03141at 233.515 kb on + strand, within BACOVA_03141at 233.515 kb on + strand, within BACOVA_03141at 233.515 kb on + strand, within BACOVA_03141at 233.516 kb on - strand, within BACOVA_03141at 233.550 kb on + strand, within BACOVA_03141at 233.561 kb on - strand, within BACOVA_03141at 233.561 kb on - strand, within BACOVA_03141at 233.615 kb on - strand, within BACOVA_03141at 233.675 kb on - strand, within BACOVA_03141at 233.675 kb on - strand, within BACOVA_03141at 233.675 kb on - strand, within BACOVA_03141at 233.678 kb on + strand, within BACOVA_03141at 233.753 kb on + strandat 233.789 kb on + strandat 233.797 kb on - strandat 233.849 kb on + strandat 233.850 kb on - strandat 233.854 kb on + strandat 233.855 kb on - strandat 233.878 kb on - strandat 233.895 kb on + strandat 233.896 kb on - strandat 233.896 kb on - strandat 233.910 kb on - strandat 233.925 kb on + strandat 233.947 kb on - strandat 233.962 kb on - strandat 233.976 kb on - strandat 234.078 kb on + strandat 234.090 kb on + strand, within BACOVA_03142at 234.171 kb on + strand, within BACOVA_03142at 234.176 kb on - strand, within BACOVA_03142at 234.190 kb on + strand, within BACOVA_03142at 234.191 kb on - strand, within BACOVA_03142at 234.207 kb on + strand, within BACOVA_03142at 234.207 kb on + strand, within BACOVA_03142at 234.214 kb on - strand, within BACOVA_03142at 234.223 kb on - strand, within BACOVA_03142at 234.301 kb on + strand, within BACOVA_03142at 234.302 kb on - strand, within BACOVA_03142at 234.305 kb on + strand, within BACOVA_03142at 234.305 kb on + strand, within BACOVA_03142at 234.305 kb on + strand, within BACOVA_03142at 234.305 kb on + strand, within BACOVA_03142at 234.305 kb on + strand, within BACOVA_03142at 234.349 kb on + strand, within BACOVA_03142at 234.383 kb on - strand, within BACOVA_03142at 234.398 kb on - strand, within BACOVA_03142at 234.438 kb on - strand, within BACOVA_03142at 234.456 kb on - strand, within BACOVA_03142at 234.472 kb on - strand, within BACOVA_03142at 234.478 kb on + strand, within BACOVA_03142at 234.479 kb on - strand, within BACOVA_03142at 234.526 kb on + strand, within BACOVA_03142at 234.545 kb on - strand, within BACOVA_03142at 234.555 kb on + strand, within BACOVA_03142at 234.555 kb on + strand, within BACOVA_03142at 234.556 kb on - strand, within BACOVA_03142at 234.614 kb on - strand, within BACOVA_03142at 234.653 kb on + strand, within BACOVA_03142at 234.655 kb on + strand, within BACOVA_03142at 234.655 kb on + strand, within BACOVA_03142at 234.656 kb on - strand, within BACOVA_03142at 234.746 kb on + strand, within BACOVA_03142at 234.747 kb on - strand, within BACOVA_03142at 234.770 kb on - strand, within BACOVA_03142

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
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231,886 + BACOVA_03140 0.28 -0.8
231,887 - BACOVA_03140 0.29 +0.1
231,905 + BACOVA_03140 0.30 +0.0
231,909 - BACOVA_03140 0.30 +2.6
231,981 + BACOVA_03140 0.36 -0.4
232,043 + BACOVA_03140 0.41 +0.3
232,044 - BACOVA_03140 0.41 -0.5
232,144 + BACOVA_03140 0.49 +1.5
232,154 + BACOVA_03140 0.50 +0.9
232,155 - BACOVA_03140 0.50 +0.8
232,156 + BACOVA_03140 0.50 +0.4
232,157 - BACOVA_03140 0.50 -0.3
232,157 - BACOVA_03140 0.50 -0.1
232,157 - BACOVA_03140 0.50 -0.6
232,157 - BACOVA_03140 0.50 +0.6
232,164 + BACOVA_03140 0.50 -0.4
232,199 - BACOVA_03140 0.53 -0.5
232,262 + BACOVA_03140 0.58 -0.5
232,262 + BACOVA_03140 0.58 +0.5
232,263 - BACOVA_03140 0.58 -0.2
232,263 - BACOVA_03140 0.58 +0.8
232,265 - BACOVA_03140 0.58 +0.6
232,301 - BACOVA_03140 0.61 -1.7
232,319 + BACOVA_03140 0.62 +3.2
232,411 + BACOVA_03140 0.70 -0.3
232,427 - BACOVA_03140 0.71 -0.2
232,517 - BACOVA_03140 0.78 -0.3
232,517 - BACOVA_03140 0.78 -0.2
232,572 - BACOVA_03140 0.82 -0.9
232,575 + BACOVA_03140 0.83 -0.3
232,575 + BACOVA_03140 0.83 +0.2
232,757 + -1.5
232,757 + +0.3
232,757 + +0.1
232,758 - -0.2
232,759 + +0.4
232,760 - +0.8
232,766 - -0.3
232,780 - -0.1
232,780 - -1.4
232,790 - -0.2
232,838 + +0.1
232,839 - -0.3
232,839 - +0.7
232,860 - -0.3
232,892 + -0.1
232,893 - -0.7
232,922 + BACOVA_03141 0.12 -1.2
232,952 + BACOVA_03141 0.15 +0.2
232,959 - BACOVA_03141 0.16 +0.5
232,959 - BACOVA_03141 0.16 -0.1
232,959 - BACOVA_03141 0.16 -0.3
233,054 + BACOVA_03141 0.25 +0.6
233,069 + BACOVA_03141 0.27 -0.0
233,070 - BACOVA_03141 0.27 -0.7
233,073 - BACOVA_03141 0.27 -0.9
233,088 + BACOVA_03141 0.29 -0.5
233,091 + BACOVA_03141 0.29 -0.1
233,140 - BACOVA_03141 0.34 -1.2
233,224 - BACOVA_03141 0.43 +0.3
233,303 - BACOVA_03141 0.51 -1.5
233,346 - BACOVA_03141 0.55 +1.5
233,400 + BACOVA_03141 0.61 +1.3
233,401 - BACOVA_03141 0.61 +0.1
233,401 - BACOVA_03141 0.61 +0.6
233,433 + BACOVA_03141 0.64 -0.2
233,478 + BACOVA_03141 0.69 +0.2
233,515 + BACOVA_03141 0.73 +0.5
233,515 + BACOVA_03141 0.73 -0.1
233,515 + BACOVA_03141 0.73 +0.0
233,516 - BACOVA_03141 0.73 -0.7
233,550 + BACOVA_03141 0.76 -1.5
233,561 - BACOVA_03141 0.77 +1.1
233,561 - BACOVA_03141 0.77 -0.7
233,615 - BACOVA_03141 0.83 -0.4
233,675 - BACOVA_03141 0.89 -1.9
233,675 - BACOVA_03141 0.89 -0.4
233,675 - BACOVA_03141 0.89 -0.3
233,678 + BACOVA_03141 0.89 -1.4
233,753 + -0.3
233,789 + +0.9
233,797 - +0.2
233,849 + -1.0
233,850 - +0.4
233,854 + -1.0
233,855 - +1.5
233,878 - -0.2
233,895 + +0.2
233,896 - +0.4
233,896 - +0.5
233,910 - -0.6
233,925 + -1.3
233,947 - -0.2
233,962 - +0.6
233,976 - +1.3
234,078 + -0.3
234,090 + BACOVA_03142 0.10 -0.7
234,171 + BACOVA_03142 0.17 -1.0
234,176 - BACOVA_03142 0.17 +0.1
234,190 + BACOVA_03142 0.18 -0.7
234,191 - BACOVA_03142 0.18 -0.8
234,207 + BACOVA_03142 0.19 +0.9
234,207 + BACOVA_03142 0.19 +0.5
234,214 - BACOVA_03142 0.20 +1.6
234,223 - BACOVA_03142 0.21 +0.4
234,301 + BACOVA_03142 0.26 +1.0
234,302 - BACOVA_03142 0.27 -0.3
234,305 + BACOVA_03142 0.27 -0.8
234,305 + BACOVA_03142 0.27 +0.2
234,305 + BACOVA_03142 0.27 +0.9
234,305 + BACOVA_03142 0.27 -0.5
234,305 + BACOVA_03142 0.27 -0.3
234,349 + BACOVA_03142 0.30 -0.6
234,383 - BACOVA_03142 0.33 -1.0
234,398 - BACOVA_03142 0.34 +0.1
234,438 - BACOVA_03142 0.37 +0.3
234,456 - BACOVA_03142 0.38 -1.4
234,472 - BACOVA_03142 0.40 +0.3
234,478 + BACOVA_03142 0.40 -1.0
234,479 - BACOVA_03142 0.40 +0.2
234,526 + BACOVA_03142 0.44 -1.1
234,545 - BACOVA_03142 0.45 +1.3
234,555 + BACOVA_03142 0.46 +1.1
234,555 + BACOVA_03142 0.46 -0.4
234,556 - BACOVA_03142 0.46 +1.5
234,614 - BACOVA_03142 0.50 +0.5
234,653 + BACOVA_03142 0.53 +0.2
234,655 + BACOVA_03142 0.53 -0.3
234,655 + BACOVA_03142 0.53 +0.6
234,656 - BACOVA_03142 0.54 +0.5
234,746 + BACOVA_03142 0.60 +0.5
234,747 - BACOVA_03142 0.60 -1.3
234,770 - BACOVA_03142 0.62 +1.4

Or see this region's nucleotide sequence